Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 125 / 5e-33 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G06690 100 / 9e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 94 / 1e-21 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 91 / 3e-20 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 89 / 9e-20 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 88 / 3e-19 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 82 / 2e-17 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 79 / 2e-16 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G10810 77 / 2e-15 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003751 [exp] 481 / 8e-173 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 301 / 3e-100 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023674 [exp] 134 / 3e-36 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10011751 [exp] 132 / 7e-36 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10029615 [exp] 103 / 8e-25 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 100 / 6e-24 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 94 / 2e-21 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 92 / 9e-21 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 89 / 9e-20 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042100 [exp] 587 / 0 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 288 / 4e-95 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 133 / 4e-36 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.002G055500 [exp] 107 / 5e-26 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 103 / 8e-25 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 100 / 7e-24 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 99 / 2e-23 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 97 / 2e-22 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 92 / 1e-20 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 91 / 1e-20 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10028045 pacid=23181157 polypeptide=Lus10028045 locus=Lus10028045.g ID=Lus10028045.BGIv1.0 annot-version=v1.0 ATGACTTTCGGCGAGCAGAACACTTTGCCTGAATCATTTCGCCTTCTCGACGAAGCTTTTCAAGCTGGAATCAACTTCTTTGACTCCGCTGAAATGTATC CGGTGCCGCAACGAGCTGAGACTCAGGGAAGAAGCGAGGAGTATTTGGGCCTCTGGATTAAAGATAGGAAGATTCCCAGGGATCGAGTTGTGGTTTCAAC CAAGGTTGCAGGGCCTTCTGGGCAGATGACATGGATTCGAGGAGGGCCGATTCGTTTGGACTCTAAGAATATTACTGAAGCTGTTGATAGTAGCTTAAAA CGAATGCAGTTGGACTACATTGATCTCTATCAAATTCATTGGCCTGATCGATATGTTCCGATGTTTGGAGAAACCGAGTATGACCCTACTCGCCAGTTCA ATTCAATTTGCATAGAAGAACAACTTGATGCCCTTGGCAAAGCTGTGGCAGCTGGAAAGATTAGATACATTGGGCTTAGCAATGAAACTCCGTATGGCAT TATGAAGTTTATTGAGGTTTCTAAAAGAGATGGTCTGTATCCAAACATTGTATCATTGCAGAATGCATACAACTTGCTCTGCCGAACTTTTGATTCTGGA TTGGCGGAATGCTGTCATCATGAGGGAATCAGCTTATTAGCATACAGTCCCCTTGCAATGGGGATACTATCTGGGAAATACTTTGCATCTGACGGTGCTC CCCCAGATGCTCGCTTCAATATTTTTAGAGGTTTGTATACAGAAGGAGAGTCGCGGTACAACCTCCAAAGTAACAGCATTAGAACAGCTGCTAAGGAATA CATGGATATTGCCCATAAATTTGGGCTACATCCTGTAACTCTTGCAATCGCATTTGTCTTGGGACACCCTCTGGTAGCAAGTGCCGTGTTTGGTGCAACC AAGTCATGGCAACTGCAGGAGGTACTGAAAGCATTCGACACTCAACTCACACCAGATGTTTTAGCAGAAGTCAACAAGGTCCATTCCAGACTACCAAATC CTTGTCCTTGA
AA sequence Show only first row Show all	>Lus10028045 pacid=23181157 polypeptide=Lus10028045 locus=Lus10028045.g ID=Lus10028045.BGIv1.0 annot-version=v1.0 MTFGEQNTLPESFRLLDEAFQAGINFFDSAEMYPVPQRAETQGRSEEYLGLWIKDRKIPRDRVVVSTKVAGPSGQMTWIRGGPIRLDSKNITEAVDSSLK RMQLDYIDLYQIHWPDRYVPMFGETEYDPTRQFNSICIEEQLDALGKAVAAGKIRYIGLSNETPYGIMKFIEVSKRDGLYPNIVSLQNAYNLLCRTFDSG LAECCHHEGISLLAYSPLAMGILSGKYFASDGAPPDARFNIFRGLYTEGESRYNLQSNSIRTAAKEYMDIAHKFGLHPVTLAIAFVLGHPLVASAVFGAT KSWQLQEVLKAFDTQLTPDVLAEVNKVHSRLPNPCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10028045 [exp]	0	1
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10026364 [exp]	5.7	0.8703
AT3G21300			RNA methyltransferase family p...		Lus10000172 [exp]	5.8	0.8677
AT1G30680			toprim domain-containing prote...		Lus10038433 [exp]	7.7	0.8530
AT4G34770			SAUR-like auxin-responsive pro...		Lus10042376 [exp]	14.6	0.7727
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10011784 [exp]	16.7	0.8455
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	19.5	0.8330
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	19.7	0.8404
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	19.8	0.8486
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	20.1	0.7778
AT5G23690			Polynucleotide adenylyltransfe...		Lus10016719 [exp]	22.4	0.8470

Compare expression of checked genes

Lus10028045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.