Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70690 40 / 0.0001 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT2G01660 39 / 0.0005 PDLP6 plasmodesmata-located protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003752 [exp] 251 / 2e-87 AT1G70690 41 / 9e-05 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10008314 [exp] 114 / 2e-33 ND / Lus10035753 [exp] 112 / 8e-32 ND / Lus10028050 [exp] 105 / 9e-30 ND 36 / 0.004 Lus10028053 [exp] 111 / 2e-29 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10008311 [exp] 104 / 2e-29 ND 35 / 0.008 Lus10010116 [exp] 104 / 3e-29 ND 36 / 0.007 Lus10012621 [exp] 104 / 5e-29 ND 38 / 0.002 Lus10029618 [exp] 98 / 9e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133500 [exp] 45 / 5e-06 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 40 / 0.0002 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.004G025425 [exp] 40 / 0.0002 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G026200 [exp] 40 / 0.0003 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028046 pacid=23181248 polypeptide=Lus10028046 locus=Lus10028046.g ID=Lus10028046.BGIv1.0 annot-version=v1.0 ATGGAGCACTGCAACTCAAAATCAACAACAGCAGCAATCCTTACCCTCCTCGGAGTACTACTAGTACTAGTCGACTGCAAAGTGGGTCCGGACATCAGCA TCGTGAGAGGACCCACCTGCACCGGAATATCGAAGAACAATGGCTACACCAAGAGCGTGGGGAGTCTCCTCGACACCCTCGTCAAGGAGACTAAAAACGT ACACAGGGACACGATCCACCAAATTTACAGGTACACCCGCCAGATCCCAGACTCCGAACCCGGGTCTGTGACCGGAACTGCAGTTTGTTCGGGTGAGTTG GGTAAATCGGAATGCTGGGAGTGTTTGGCCCATGCCCAGGGGAAGCTGACTACGGGATGTGTTGATCCGGTTAAGGGCAGTATCAAGTTGCAGGATTGTT CCATTTGGTTCGACAAAAAGTGTTGA
AA sequence Show only first row Show all	>Lus10028046 pacid=23181248 polypeptide=Lus10028046 locus=Lus10028046.g ID=Lus10028046.BGIv1.0 annot-version=v1.0 MEHCNSKSTTAAILTLLGVLLVLVDCKVGPDISIVRGPTCTGISKNNGYTKSVGSLLDTLVKETKNVHRDTIHQIYRYTRQIPDSEPGSVTGTAVCSGEL GKSECWECLAHAQGKLTTGCVDPVKGSIKLQDCSIWFDKKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10028046 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001036 [exp]	6.6	0.5477
					Lus10015249 [exp]	15.3	0.5267
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	16.5	0.5041
					Lus10034849 [exp]	19.7	0.4943
					Lus10005203 [exp]	31.6	0.4743
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026536 [exp]	33.0	0.4744
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	46.0	0.4867
					Lus10010418 [exp]	46.9	0.4695
					Lus10008418 [exp]	55.7	0.4575
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	61.5	0.4325

Compare expression of checked genes

Lus10028046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.