Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21910 355 / 1e-117 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G39490 354 / 6e-117 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT4G39480 345 / 2e-113 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G23180 343 / 7e-113 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G57750 325 / 3e-106 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G32170 320 / 6e-104 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT1G47620 313 / 3e-101 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT5G23190 314 / 6e-101 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G52320 306 / 1e-98 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT1G65340 304 / 5e-98 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025678 [exp] 747 / 0 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 733 / 0 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025677 [exp] 565 / 0 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022279 [exp] 424 / 2e-144 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 410 / 4e-139 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 400 / 3e-135 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10003756 [exp] 389 / 7e-135 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 390 / 6e-131 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 387 / 1e-129 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G086900 [exp] 410 / 6e-139 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.001G397900 [exp] 409 / 1e-138 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 391 / 2e-131 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 382 / 7e-128 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 362 / 2e-120 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 333 / 4e-110 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 327 / 3e-106 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 327 / 6e-106 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G094500 [exp] 297 / 3e-95 AT1G47620 372 / 7e-124 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 296 / 3e-94 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028047 pacid=23181171 polypeptide=Lus10028047 locus=Lus10028047.g ID=Lus10028047.BGIv1.0 annot-version=v1.0 ATGGCAGCACTAGCAGTTCTACTACTCCCCCCTCTCCTCACAATCACTCTGGTTTACATCATCGGCGGCAACTACAAAGCCTACAAGCTAATCTACGACA TCCTCCGCCGCCCATCCCAGCTCCACCACACGATCGCCGACTTCCTCAAGTCCTGTGGCGGCACAGCACATTCCACTAATATAGTCCTCACCTCCGATCC CAAAAATATAGACCATGTGTTCAACAAGCGCCACTCCAATTTTCCCAAAGGCGCCGAGTTCAAAGACAAGCTTGACGCCTTGGGGGATGGAATCTTCACT GCAGATGGAGAATCCGGTCTCTCCCAGCGCCGGATCCTCCTATCTGTCTTCAATTCCCCACCATTCCAACAGCTTCTTAGAACTTCCCTCCTTGGAAAGC TCAAATCCGGCATGTTCCCTGTCTTGGACCGTGAGGTTAGTGCACAGTCCGGGGAATTGGACATGCAGGACGTGTACAAGAGGTTCATGTTCGACATTAT TTGCACAACCGTGCTTGGATTCGACCCGAATTATCTCACTGTCGAACTTCTCCCGGACATCCTGTATGCTAAGGCGTACGAGGACTTGGAGGAGGCTACG GTTTACCGTTATGTCACGCCGGACTTATGGTGGAAATTTCAGAGGTGGGCCGGAATCGGAGAAGAGAGAAAGTACAGGAAAGCTCGGGAGAGGTTTGACG AATTCCTCTATGGAAGGATCAATGTCAAGAGACAGAGCCTTGACAAAACAGAGAAGAAAAATCATCAATTCGACTTGTTGACATTTTTTATGGCGGAAGA TCGAGAACAGAACGAGTCGAGAGAAAGCAGTCGCATCGGAAAATCTGACAGGCTCGTGAGAGATATGGCGTTCAACATGATCGCAGCAGGGAGAGACACG ATCTCCATCAATCTATCATGGCTGCTCTGGCTCATTGTTTCACACCCCGACGTTGAGGTGAAAATTCTCGATGAAATCGAGGAGAATTTAGGCAACAAAA ACTGGAGACTCTTAAGCGACGAAGAGATGAACAAGATGGTGTACTTGCATGCAGCCGTGTGCGAGGCGCTGAGGCTATACCCGCCGCTTGCGTTCGAGCA TCGGACAACAATAGAGGCAGATACACTGCCGAGCGGGCATTTCGTCGGGAAGAACACGATGATTTTGTTTTCATTGTATTCAACGGGGAGGATGGAGGAG GTTTGGGGGAAAGATTGTATGGAGTTTAAGCCAGAGAGGTGGATTAGCGAAGAAGGGGATAAGATTGTTCACGTTCCGTCATACAAGTTCTCCGCTTTTT TAACTGGACCTAGGGCTTGCTTGGGAAAGAATATTGCTTTCTTGTATGTCAAGCAAGTCACAAGTGCTTTGCTTTATAACTACAAGGTGGAATTGGTGGA AGGACATCATGTTATCCCTGCAGTTTCGATCATGTTATTCATGAAACACGGTTTGAAAGTTCGAGTTTTGAGAAGAAGGTAA
AA sequence Show only first row Show all	>Lus10028047 pacid=23181171 polypeptide=Lus10028047 locus=Lus10028047.g ID=Lus10028047.BGIv1.0 annot-version=v1.0 MAALAVLLLPPLLTITLVYIIGGNYKAYKLIYDILRRPSQLHHTIADFLKSCGGTAHSTNIVLTSDPKNIDHVFNKRHSNFPKGAEFKDKLDALGDGIFT ADGESGLSQRRILLSVFNSPPFQQLLRTSLLGKLKSGMFPVLDREVSAQSGELDMQDVYKRFMFDIICTTVLGFDPNYLTVELLPDILYAKAYEDLEEAT VYRYVTPDLWWKFQRWAGIGEERKYRKARERFDEFLYGRINVKRQSLDKTEKKNHQFDLLTFFMAEDREQNESRESSRIGKSDRLVRDMAFNMIAAGRDT ISINLSWLLWLIVSHPDVEVKILDEIEENLGNKNWRLLSDEEMNKMVYLHAAVCEALRLYPPLAFEHRTTIEADTLPSGHFVGKNTMILFSLYSTGRMEE VWGKDCMEFKPERWISEEGDKIVHVPSYKFSAFLTGPRACLGKNIAFLYVKQVTSALLYNYKVELVEGHHVIPAVSIMLFMKHGLKVRVLRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	6.2	0.8715
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	6.3	0.8644
					Lus10025164 [exp]	9.0	0.8637
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	9.8	0.8497
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	14.0	0.8577
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	15.1	0.8601
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	15.2	0.8043
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	15.2	0.8426
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	17.7	0.7961
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	22.6	0.8244

Compare expression of checked genes

Lus10028047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.