Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003757 [exp] 263 / 6e-92 ND / Lus10010117 [exp] 231 / 2e-79 ND 39 / 4e-04 Lus10012621 [exp] 188 / 5e-62 ND 38 / 0.002 Lus10010116 [exp] 184 / 8e-61 ND 36 / 0.007 Lus10014738 [exp] 164 / 4e-53 ND / Lus10003758 [exp] 166 / 1e-52 ND / Lus10002731 [exp] 156 / 2e-50 ND / Lus10008311 [exp] 110 / 7e-32 ND 35 / 0.008 Lus10035753 [exp] 111 / 1e-31 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 37 / 0.001 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028048 pacid=23181193 polypeptide=Lus10028048 locus=Lus10028048.g ID=Lus10028048.BGIv1.0 annot-version=v1.0 ATGTACTCCCCGTCAAAACTATACGCAACAGTGATTATGCTACTGTGTATAGTTGTTGACGGGAAACTCCCCGACAAGACCATCCTAAGCGGACCTGATT GCATGGGGAAATCGACGACCAAAACGTACAATCACAATGTTAAGGGTCTCATGGCCAGCTTCGTAAAGGACACGCCGGAAAGTGAAAGGAATATATTGGG GGACAGACAAATGAATCATAGCTACCCGAATCGAAACCCGGGGTCGCCTTTCGGAGTCTCCACATGCTACCAAGACCTTGGGAAGTTTGATTGTTGGAAC TGTCTCTTCTCCGCTAAGGGTAAACTGGAAAAGGGTTGCTTGCATCCCATTGCTGCTACTGTAAGACTCCAGGACTGCTCCATCACTTTTAACATTACCG TTGGAGTGCTTTGA
AA sequence Show only first row Show all	>Lus10028048 pacid=23181193 polypeptide=Lus10028048 locus=Lus10028048.g ID=Lus10028048.BGIv1.0 annot-version=v1.0 MYSPSKLYATVIMLLCIVVDGKLPDKTILSGPDCMGKSTTKTYNHNVKGLMASFVKDTPESERNILGDRQMNHSYPNRNPGSPFGVSTCYQDLGKFDCWN CLFSAKGKLEKGCLHPIAATVRLQDCSITFNITVGVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028048 [exp]	0	1
					Lus10001123 [exp]	2.4	1.0000
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	2.6	1.0000
					Lus10023352 [exp]	3.0	1.0000
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	5.3	1.0000
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	6.3	1.0000
					Lus10009177 [exp]	6.9	1.0000
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10011252 [exp]	7.5	1.0000
					Lus10035026 [exp]	7.5	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	8.1	0.8034
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	8.5	1.0000

Compare expression of checked genes

Lus10028048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.