Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05200 38 / 0.001 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010118 [exp] 210 / 3e-71 AT1G04520 40 / 3e-04 plasmodesmata-located protein 2 (.1) Lus10012623 [exp] 208 / 2e-70 ND 38 / 0.001 Lus10003759 [exp] 176 / 8e-58 ND 38 / 9e-04 Lus10010115 [exp] 159 / 1e-51 AT5G48540 41 / 5e-05 receptor-like protein kinase-related family protein (.1) Lus10003758 [exp] 153 / 2e-47 ND / Lus10035753 [exp] 125 / 7e-37 ND / Lus10008314 [exp] 120 / 6e-36 ND / Lus10028050 [exp] 120 / 1e-35 ND 36 / 0.004 Lus10014738 [exp] 112 / 1e-32 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 48 / 8e-08 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G026200 [exp] 42 / 5e-05 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025425 [exp] 42 / 6e-05 AT4G21410 556 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024228 [exp] 39 / 0.0007 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 38 / 0.001 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023788 [exp] 38 / 0.001 AT4G23180 559 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10028049 pacid=23181106 polypeptide=Lus10028049 locus=Lus10028049.g ID=Lus10028049.BGIv1.0 annot-version=v1.0 ATGCATTCCTCGTCGAAACTAGCAATTGCAGTCTTGGTCATGGGTCTTATAACAAACATGCTCCTCGTCGTGGACGCCAAACTTCCTAACACCAATGTCC TGATCAAGCCTGGTTGCGCTGAAAGATATGCGGGCAAGAGATTCGGCAATTACGTGACTCGTCTGTTGGATCTCCTGGTGGACGAAACGAAGAATGTGTA CAGGAACAAGGACGGGAGTTACACGTACCGTCATAGCTACCCTGATATGGATTCGGGATCGGCTTATGGGGTGGGGAATTGTGGTAAGAAGCTTGAGAAG TTGGATTGTTGGTCGTGTCTTCGAAATGCTAAGGACAAGGTCATGTCGGCTTGCTACAGAGCAGTCGGTGGTAACGTCACTCTTACGGACTGCTCCATCT CCTTCAACCGGATTCCGTAA
AA sequence Show only first row Show all	>Lus10028049 pacid=23181106 polypeptide=Lus10028049 locus=Lus10028049.g ID=Lus10028049.BGIv1.0 annot-version=v1.0 MHSSSKLAIAVLVMGLITNMLLVVDAKLPNTNVLIKPGCAERYAGKRFGNYVTRLLDLLVDETKNVYRNKDGSYTYRHSYPDMDSGSAYGVGNCGKKLEK LDCWSCLRNAKDKVMSACYRAVGGNVTLTDCSISFNRIP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	0	1
					Lus10014737 [exp]	1.0	1.0000
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	2.0	1.0000
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	2.4	1.0000
					Lus10021773 [exp]	2.8	1.0000
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	3.2	1.0000
					Lus10039552 [exp]	3.5	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	3.7	1.0000
					Lus10019558 [exp]	4.0	1.0000
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	4.2	0.9920
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	4.7	0.9780

Compare expression of checked genes

Lus10028049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.