Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008314 [exp] 233 / 2e-80 ND / Lus10035753 [exp] 233 / 2e-79 ND / Lus10008311 [exp] 225 / 3e-77 ND 35 / 0.008 Lus10028053 [exp] 228 / 3e-74 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10029619 [exp] 121 / 3e-36 ND / Lus10028049 [exp] 120 / 8e-36 AT1G04520 38 / 9e-04 plasmodesmata-located protein 2 (.1) Lus10003753 [exp] 117 / 8e-35 ND / Lus10029618 [exp] 117 / 1e-34 ND / Lus10042684 [exp] 117 / 2e-34 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028050 pacid=23181132 polypeptide=Lus10028050 locus=Lus10028050.g ID=Lus10028050.BGIv1.0 annot-version=v1.0 ATGGATCACGTGTCAAAATCGATGGTGGCAGTAATTCTGTTTATGGGTATTTTGAGTACGCTTATGGTTGATGCGAAACTTCCAAACAAGAGTATTATCA GTGGGCCTGACTGTTCCGGTAGATCCTACGACGTATCTTACGACAAGAAAGTATTGCGCCTCATGGACATTTTTGTCGAGGAGACCAAGAACGTTCACAG GGGTCATCACGTCGATTTTGAGTACAAACACAGTTTCCCCAATTCGGATAACGGATCCGTCAATGGTGGCGCTACTTGTGATAGGCACCTCTGGAAATTG GATTGCTGGTCATGTCTTCTCACTGCGAAGAACAAAATTAACGACAATTGTGGGCGTACTCATAATGGTGAAATTAAGCTTAAAGATTGCTCCATTTGGT TCAAGATGATCCAGTGA
AA sequence Show only first row Show all	>Lus10028050 pacid=23181132 polypeptide=Lus10028050 locus=Lus10028050.g ID=Lus10028050.BGIv1.0 annot-version=v1.0 MDHVSKSMVAVILFMGILSTLMVDAKLPNKSIISGPDCSGRSYDVSYDKKVLRLMDIFVEETKNVHRGHHVDFEYKHSFPNSDNGSVNGGATCDRHLWKL DCWSCLLTAKNKINDNCGRTHNGEIKLKDCSIWFKMIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028050 [exp]	0	1
					Lus10017557 [exp]	4.7	0.9212
AT3G47570			Leucine-rich repeat protein ki...		Lus10037955 [exp]	6.4	0.7992
					Lus10005396 [exp]	7.9	0.9152
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	8.2	0.7372
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	8.6	0.7206
					Lus10003840 [exp]	9.6	0.9152
					Lus10000784 [exp]	11.1	0.9152
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	12.4	0.9152
					Lus10022573 [exp]	13.6	0.9152
					Lus10006661 [exp]	14.7	0.9152

Compare expression of checked genes

Lus10028050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.