Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 94 / 5e-20 AtRLP6 receptor like protein 6 (.1) AT1G47890 81 / 7e-16 AtRLP7 receptor like protein 7 (.1) AT3G05360 66 / 4e-11 AtRLP30 receptor like protein 30 (.1) AT3G11080 64 / 2e-10 AtRLP35 receptor like protein 35 (.1) AT4G13920 61 / 8e-10 AtRLP50 receptor like protein 50 (.1) AT3G05660 59 / 4e-09 AtRLP33 receptor like protein 33 (.1) AT5G27060 57 / 2e-08 AtRLP53 receptor like protein 53 (.1) AT4G13810 57 / 2e-08 AtRLP47 receptor like protein 47 (.1.2) AT3G05650 57 / 3e-08 AtRLP32 receptor like protein 32 (.1) AT3G28890 56 / 5e-08 AtRLP43 receptor like protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035753 [exp] 270 / 5e-89 ND / Lus10008314 [exp] 262 / 4e-87 ND / Lus10032335 [exp] 254 / 5e-76 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10028050 [exp] 228 / 1e-73 ND 36 / 0.004 Lus10024721 [exp] 247 / 2e-73 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10008311 [exp] 226 / 9e-73 ND 35 / 0.008 Lus10027580 [exp] 236 / 7e-72 AT5G62230 194 / 4e-53 ERECTA-like 1 (.1.2) Lus10011039 [exp] 240 / 2e-69 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10014910 [exp] 231 / 1e-67 AT1G71400 357 / 7e-110 receptor like protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128400 [exp] 151 / 2e-39 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120600 [exp] 105 / 9e-24 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G437700 [exp] 97 / 2e-21 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.009G112061 [exp] 94 / 3e-20 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.016G126900 [exp] 93 / 8e-20 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 92 / 2e-19 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.012G027400 [exp] 90 / 5e-19 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G013435 [exp] 90 / 7e-19 AT3G11080 367 / 6e-112 receptor like protein 35 (.1) Potri.T125004 [exp] 90 / 9e-19 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.012G028101 [exp] 89 / 1e-18 AT3G11080 400 / 1e-123 receptor like protein 35 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028053 pacid=23181236 polypeptide=Lus10028053 locus=Lus10028053.g ID=Lus10028053.BGIv1.0 annot-version=v1.0 ATGGATTGCGTGTCGAAATCTGCGGTGGTTGTCATTCTGTTGATGAGTGTTTTGAGTACGCTCGTCGTTGATGCCAAACTTCCCGACAAGAGTATCATCA GCGGCCCTGACTGTTACGGCAAATCCAACGATATGTCATACAACAAGAAGGTGTCGCGTCTCATGGACATTTTTGTTGACGAGACAAAGAACATTCACAG GGATCATCACGTTGATTATGTGTACAAACACAGCTTCCCCGATTCAGATTTTGGCTCCGTCACTGGGGGCGCTACGTGCGACAGGCACCTTTGGAAGTTG GATTGTTGGTCATGTCTCCTCACCGCAAAAAACAAAATTTATAACAATTGTGAGCGTACCCATGATGCTGAAGTTAAACTCAAAGATTGCTCCCTTTGGT TCAAGAAGATCCAATCTCTTCTCCTACGTGTCAAAAATGAAATCTCCATCGATGCTGATCGTTATCGTTATCATTTAGATGATTATCATCGTTTTCCAGG CGAATTTGATGTTGGATACGTACCTACTCCACCCAAAGTTTGGTCCTGGAACGGCACAAAATATCATGAAGACTGTCGTATGTGGGAAGGAGTCACTTGT GATTCCCACTCGGGACACGTTGTCGGCCTCGACCTCAGCAACAGTTACAATGGTGGCGGAATCAATGGATCTAGCTCTATCTTCCGCTTTCAACATCTAC GAAGTCTTAGTCTGGCTTATAACATCATGTCAGGCTCAGGTTACCCTTCTGGTTTCAGTAACCTGTCCAGTTTGACCCATCTCAACCTTTCAGCTGCAGA TTTTGAGGGTCCAATTCCAGAGCGTGAGATTTCACTTCTGGGAAATTTGGTGTCTCTTGATCTTTCTTATAATTCATATTCAAGTGTAGATATGGAAAAG CTAGTCAAGAACCTGGCGCAACTCCGAGTGCTCCATATGGACGAAATAGACCTCTCTCAAACCATGAAGAATATACCTTGGTCAACCTTGCCTGATATTC AAGAGCTGAGTCTGGCAAATTGTAACTTCACTGGAGAAGCACTACAATTTTCGTTTCTTCTACACTTGAAATCCCTCACTCATTTGATACTATCGTTCAA TGATCTCGCCTGGAATATCTCTGGATATTCATTCATCCAGTTTCCTCACCTTATAAATCTCGAGCTTATCGATTGTAAGTTGTTTGGAAGATTTTTCAAT AGTGTCTTCTTGATTCCCAATGTACAATTTGTTGATGTTTCTGGCAATGATCAACTCTCCGATACTCTACCTCACTTCCCCACTGGCAACAGCTCACTAC AAATTATTTACCTTGGAGGAACATTATTTTCTGGAGAAATACCTGACACTGGACCTCTGTGA
AA sequence Show only first row Show all	>Lus10028053 pacid=23181236 polypeptide=Lus10028053 locus=Lus10028053.g ID=Lus10028053.BGIv1.0 annot-version=v1.0 MDCVSKSAVVVILLMSVLSTLVVDAKLPDKSIISGPDCYGKSNDMSYNKKVSRLMDIFVDETKNIHRDHHVDYVYKHSFPDSDFGSVTGGATCDRHLWKL DCWSCLLTAKNKIYNNCERTHDAEVKLKDCSLWFKKIQSLLLRVKNEISIDADRYRYHLDDYHRFPGEFDVGYVPTPPKVWSWNGTKYHEDCRMWEGVTC DSHSGHVVGLDLSNSYNGGGINGSSSIFRFQHLRSLSLAYNIMSGSGYPSGFSNLSSLTHLNLSAADFEGPIPEREISLLGNLVSLDLSYNSYSSVDMEK LVKNLAQLRVLHMDEIDLSQTMKNIPWSTLPDIQELSLANCNFTGEALQFSFLLHLKSLTHLILSFNDLAWNISGYSFIQFPHLINLELIDCKLFGRFFN SVFLIPNVQFVDVSGNDQLSDTLPHFPTGNSSLQIIYLGGTLFSGEIPDTGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10028053 [exp]	0	1
AT3G22490			Seed maturation protein (.1)		Lus10015948 [exp]	6.0	0.7889
AT2G14540		ATSRP2	serpin 2 (.1)		Lus10009905 [exp]	9.7	0.7734
					Lus10035913 [exp]	11.1	0.8552
AT5G05220			unknown protein		Lus10034248 [exp]	12.3	0.8053
					Lus10023665 [exp]	14.6	0.8495
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	43.5	0.7542
AT3G07120			RING/U-box superfamily protein...		Lus10025921 [exp]	47.7	0.7534
					Lus10027563 [exp]	85.4	0.7598
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10000771 [exp]	96.4	0.7333
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	100.3	0.7628

Compare expression of checked genes

Lus10028053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.