Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80150 437 / 6e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 179 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 164 / 9e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 163 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G61870 163 / 2e-45 PPR336 pentatricopeptide repeat 336 (.1) AT3G13150 158 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 154 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11630 142 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07740 109 / 1e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 106 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032338 [exp] 654 / 0 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 652 / 0 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019119 [exp] 517 / 0 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020073 [exp] 166 / 2e-46 AT1G55890 313 / 6e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 153 / 1e-41 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020055 [exp] 151 / 4e-41 AT1G61870 453 / 8e-159 pentatricopeptide repeat 336 (.1) Lus10007619 [exp] 145 / 4e-39 AT3G13160 341 / 2e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018394 [exp] 145 / 7e-39 AT3G13160 327 / 8e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024025 [exp] 140 / 3e-37 AT4G36680 475 / 1e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062700 [exp] 494 / 6e-174 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 478 / 6e-168 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 179 / 7e-52 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 174 / 1e-49 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G125400 [exp] 160 / 3e-44 AT4G36680 478 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 156 / 5e-43 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 155 / 1e-42 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 147 / 1e-39 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G018000 [exp] 136 / 1e-35 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.004G030000 [exp] 134 / 7e-35 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0020 [flax] [poplar] PF08597 [flax] [poplar] eIF3_subunit Translation initiation factor eIF3 subunit
Representative CDS sequence Show only first row Show all	>Lus10028054 pacid=23181153 polypeptide=Lus10028054 locus=Lus10028054.g ID=Lus10028054.BGIv1.0 annot-version=v1.0 ATGCTCACACTGAGGTCAGTTCGCACATTTTTTCGTTACCGTACTGCTGTTGCATTGACTGATACCTACAGTACTGCATCTAACGCCATCATGAAAATAA ATGTAATTGAAGAAGAACCTGCTCTCGTCAAGCTTAAATGCGAGAGAGATCCTGAAAAGCTATATAATCTTTTCAAGGCCAATGCTAAGAATAGGCTTGT CATTGAGAACCGGTTTGCATTTGAAGACACTATTTCCCGCTTAGCTGGTGCAAGACGGTTTGATTACATTGAGGATTTGCTTGAGCAACAAAAGTCTCTT CCACAAGGCAGACGTGAAGGGTTTATTGTGAGAATTATTATGTTGTATGGAAAGGCTGGGATGGTTAAGCATGCCCTCAATACCTTCTATGATATGCATC AGTCAAAAAGAACAGCTAAGTCTTTTAATGCTGCACTTACGGTATTGACCGGAACGCTCGACATGGCAGTGATTGATGCATTTCTGAGAGAGGTTCCTAA GAAGTATGAACTAGAGTTAGATTTATACTCTTTGAACATCGTCACTAAGGCCTTCTGTAAGATGGCTTATTTAGATAAGGCATTTTTGTTCATGGTGAGG ATGGAAAAGTTGGGGATAAGGCCAGATGTGATAACATTCACTACACTTCTTGCAGCTTTTTACAAAGACAATAGGTTCGAAATTGCCAATGGTTTGTGGA ATCTAATGGTACTTAAGGGCTGCTTCCCAAATGTTGCAACTTTCAATGTCAGAATTCAGTATTTGGTGAATAGAAGACAAGCATGGAAAGCAAATGATGT GATGCTTCTGATGCAGAAAGTTGGTATGTTACCAGATGAGATCACTTATAACTTAGTTATCAAAGGTTTCTTTCGGGCTGGACACGTTGAGATGGCGAAA AGGGTATACTCTGCGTTGCCAGGAAGACGATTTAAGCCCAATGTTAAGATATACCAGACTATGGTTCATTATTTGTGTGAGGGTGGGGAACTTGATATGG CTTATACTATGGAGGAGGAGCACATTCCATCTCTTGTTTTGAAGGAGCAACCTAAAAGCAAATGGGATGATGAAGATGTGGATGATAATGATATTAAGGA ATCGTGGGAAGATGAAGATGAAGATAAACCGCCAGTGGTTCCTGAATCAAAACCTTCCCCAGAGAAGGCCCCCAAGAAGCCTGTAACAAAGCCAGCGAAA GGCAAAACTGTTGAACCGGCGAAGGAAGAAGCACCACTAGATCCTGTAGCAGAGAAACTTCACCAGCAAAGACCAAAATCATTCCTGCTTGAAGGAAATT TTGCAGCCCTTAAGCTCGACATCGCCGGACGTTTTATCGCCGCATTTGGCCGTCAGCTTACCCCCGGCGTAGCCCAGGCACGGACCGCATGA
AA sequence Show only first row Show all	>Lus10028054 pacid=23181153 polypeptide=Lus10028054 locus=Lus10028054.g ID=Lus10028054.BGIv1.0 annot-version=v1.0 MLTLRSVRTFFRYRTAVALTDTYSTASNAIMKINVIEEEPALVKLKCERDPEKLYNLFKANAKNRLVIENRFAFEDTISRLAGARRFDYIEDLLEQQKSL PQGRREGFIVRIIMLYGKAGMVKHALNTFYDMHQSKRTAKSFNAALTVLTGTLDMAVIDAFLREVPKKYELELDLYSLNIVTKAFCKMAYLDKAFLFMVR MEKLGIRPDVITFTTLLAAFYKDNRFEIANGLWNLMVLKGCFPNVATFNVRIQYLVNRRQAWKANDVMLLMQKVGMLPDEITYNLVIKGFFRAGHVEMAK RVYSALPGRRFKPNVKIYQTMVHYLCEGGELDMAYTMEEEHIPSLVLKEQPKSKWDDEDVDDNDIKESWEDEDEDKPPVVPESKPSPEKAPKKPVTKPAK GKTVEPAKEEAPLDPVAEKLHQQRPKSFLLEGNFAALKLDIAGRFIAAFGRQLTPGVAQARTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	3.2	0.8505
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	10.7	0.8021
AT3G56870			unknown protein		Lus10018851 [exp]	11.8	0.8169
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	16.0	0.8086
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	20.0	0.8125
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	25.5	0.8056
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	28.9	0.7997
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	29.5	0.7937
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	30.9	0.7860
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	31.4	0.7594

Compare expression of checked genes

Lus10028054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.