Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66070 179 / 1e-56 Translation initiation factor eIF3 subunit (.1.2) AT5G37475 166 / 3e-51 Translation initiation factor eIF3 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008317 [exp] 284 / 7e-97 AT5G37475 209 / 4e-67 Translation initiation factor eIF3 subunit (.1) Lus10028054 [exp] 59 / 6e-10 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138300 [exp] 177 / 7e-56 AT5G37475 200 / 8e-65 Translation initiation factor eIF3 subunit (.1) Potri.004G082200 [exp] 155 / 3e-47 AT1G66070 175 / 8e-55 Translation initiation factor eIF3 subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08597 [flax] [poplar] eIF3_subunit Translation initiation factor eIF3 subunit
Representative CDS sequence Show only first row Show all	>Lus10028057 pacid=23181217 polypeptide=Lus10028057 locus=Lus10028057.g ID=Lus10028057.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGGAGCACATTCCATCTCTTGTTTTGAAGGAGCAACCTAAAAAAAGTGAATGGGATGATGAAGATGTGGAAGTCAATGATATTAAGGATT CGTGGGAAGATCCAGATGAAGATGAAGATAAACCGCCTGTGGTTCCTGAATCAAAACCTTCCCCGGAGAAGGTCACCAAGAAGCCTGTAGCAAAGCCAGC GAAAGGCAAAACTGTTGAACCAGCAAAGGAAGAAGCACCACTAGATCCTGCAGCAGAGAAACTTCGCCAGCAGAGGCTTGTTGAAGAAGCTGATTACCGA AACACTCGGGAGTTATTTGGCTCAAGCAATGCTGAAAAGACCATTGATAATTTTATCCCCAAATCAGAAAGCGACTTTGAGGAATATGCAGAGCTGATTT CACAAAAGCTTCGTCTACATGAGAAAAGTTACCATTTCATCCCTCTGCTGAAATCAGTAATGAGACTGTCGATGACTAGTTTAAAAGCAGCCGACGCAAA AGACGTGGCTTCAGCCATAACTGCAATTGCGAATGAAAAGCTCAAGGCAGAGAAAGAAGCCAATGCTGGCAAAAAGAAAACAGGTGGGAAAAAGAAGCAG CTGCATGTCGATAAGCCGGACGATGATATGGTGGTGAAAGGATATGATGCGCTTGATGATTATGATTTCATGTGA
AA sequence Show only first row Show all	>Lus10028057 pacid=23181217 polypeptide=Lus10028057 locus=Lus10028057.g ID=Lus10028057.BGIv1.0 annot-version=v1.0 MAEEEHIPSLVLKEQPKKSEWDDEDVEVNDIKDSWEDPDEDEDKPPVVPESKPSPEKVTKKPVAKPAKGKTVEPAKEEAPLDPAAEKLRQQRLVEEADYR NTRELFGSSNAEKTIDNFIPKSESDFEEYAELISQKLRLHEKSYHFIPLLKSVMRLSMTSLKAADAKDVASAITAIANEKLKAEKEANAGKKKTGGKKKQ LHVDKPDDDMVVKGYDALDDYDFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37475			Translation initiation factor ...		Lus10028057 [exp]	0	1
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	4.6	0.7904
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	4.6	0.7594
AT1G42480			unknown protein		Lus10030732 [exp]	7.7	0.7187
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	8.9	0.6639
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	9.4	0.7527
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031002 [exp]	11.0	0.7630
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	13.7	0.7275
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	17.3	0.7359
AT1G77350			unknown protein		Lus10018864 [exp]	17.9	0.7301
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031126 [exp]	18.0	0.7181

Compare expression of checked genes

Lus10028057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.