Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49910 50 / 4e-08 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT4G24280 49 / 8e-08 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT3G12580 49 / 1e-07 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 47 / 3e-07 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 47 / 7e-07 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 46 / 1e-06 HSP70B heat shock protein 70B (.1) AT5G28540 45 / 2e-06 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 45 / 2e-06 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 45 / 3e-06 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 45 / 4e-06 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008324 [exp] 63 / 6e-13 AT1G09080 261 / 3e-83 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10015483 [exp] 53 / 6e-09 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10037357 [exp] 50 / 4e-08 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10022375 [exp] 50 / 4e-08 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10035781 [exp] 50 / 5e-08 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10041615 [exp] 50 / 6e-08 AT1G16030 581 / 0.0 heat shock protein 70B (.1) Lus10039044 [exp] 50 / 6e-08 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 50 / 7e-08 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10010496 [exp] 50 / 8e-08 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 51 / 3e-08 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G006300 [exp] 49 / 8e-08 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 49 / 1e-07 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.001G042600 [exp] 49 / 2e-07 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 48 / 2e-07 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 48 / 2e-07 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 48 / 2e-07 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 48 / 2e-07 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 47 / 3e-07 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 47 / 4e-07 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10028059 pacid=23181192 polypeptide=Lus10028059 locus=Lus10028059.g ID=Lus10028059.BGIv1.0 annot-version=v1.0 ATGGACCATTCCGAAAATGGCTGTGTGCTCCGAGAGGTTGTAGATGCTGACGCCAGAAGCGTAGTGGTTCTTTTTGATGAAATTGGTGCTGCTCTTCTTG GTGCCAAACTCAGCGGGAAAGCTTCTTCTCTACAAGGTTTTAGTTTGGTTGATGTCACCCAGTTGAGTTTGGGAATTCGAGTGCTTGGTGGTCTCATGTA TGTAATCATCCCAAAAAACACCGCGCTTCCTGCCAAGAAGTCAGAGATTTGCCGCACTGCCGATTCTCAGCAACGTTCTTTTTCATTCTCCGATTCTCGG TCGGCTGGACTTTCATTTTTTTTAATAACAAGCCGTGAAACTTTAATTCATGTAAAGTAA
AA sequence Show only first row Show all	>Lus10028059 pacid=23181192 polypeptide=Lus10028059 locus=Lus10028059.g ID=Lus10028059.BGIv1.0 annot-version=v1.0 MDHSENGCVLREVVDADARSVVVLFDEIGAALLGAKLSGKASSLQGFSLVDVTQLSLGIRVLGGLMYVIIPKNTALPAKKSEICRTADSQQRSFSFSDSR SAGLSFFLITSRETLIHVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10028059 [exp]	0	1

Compare expression of checked genes

Lus10028059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.