Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21920 382 / 3e-130 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 379 / 1e-128 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT4G17080 277 / 7e-88 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 267 / 3e-84 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 92 / 1e-19 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G41210 92 / 1e-19 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 91 / 4e-19 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G56960 89 / 1e-18 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G60890 86 / 9e-18 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 84 / 5e-17 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008325 [exp] 691 / 0 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028158 [exp] 284 / 4e-90 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 248 / 1e-76 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10025636 [exp] 96 / 8e-21 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 96 / 8e-21 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 93 / 6e-20 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008651 [exp] 92 / 2e-19 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 88 / 3e-18 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 86 / 2e-17 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175800 [exp] 528 / 0 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 513 / 0 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G140000 [exp] 284 / 5e-91 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 280 / 1e-88 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 277 / 3e-88 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 277 / 1e-87 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.016G036800 [exp] 91 / 4e-19 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.002G088100 [exp] 90 / 6e-19 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 87 / 5e-18 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 86 / 1e-17 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10028062 pacid=23181174 polypeptide=Lus10028062 locus=Lus10028062.g ID=Lus10028062.BGIv1.0 annot-version=v1.0 ATGGGAAGCCAGGGGAAGCTCACGAGAAGTGCGTCGTCGTTTCTGCGGTCGTCGCCGACGGTTCGATCGTCAATCCACAGTCTACACAGCTTATCTTCGA TGGCGGAAGAGGACCTGACCACTCCTCTGAGACCGCCGGCGTCGGAGGAGGACGATAAAGAGAAAGGGAAAGAAGATCGGAGGAGGAGGCCTCACCGGTG CGGGTCGAGCTGGACTCCACGGAGGACCGGGTCGACCCGGTTCACACCGGTTTTAACAATGGTTTCAATCGCTTTCTTCTCCTTCTTCTCGCTCTCGTTT TTCCTCTTCTTCTATCTGAGAAGGGACGAGATACCTACCTCGGAGAATCTGCTGCTAGGTCTGATTTTCATCGCCATAACCCTATTCTTCGCCAGCAAGA ACAAGAGCCTAATCAACCAGAATCTCTACCTGATCAAGCAACTCTGGGACGAGAACGGGAGGAGATTCTGCGTGTTCGCTTCGAGGAGTGCCAAGAGCAG CAACAAGCAGGTGAAATGGTTCATCGGCGAGTCAGATTCGTCAATCTCCGTCAAGATTCGGAACGAGAACAAAGTAATCAGGGAAGGAGTCGAGTTCTAC AGCAATGGCGATTACTACGAGGGCGAATTCCACAAGGGCAAGTGCAATGGCTCTGGGGTTTACAACTTCTTCGTCAATGGCAGATACGAAGGCGATTGGA TCGACGGGAGGTACGACGGGTACGGGATCGAGAGCTGGGCTAGAGGGAGCAGGTACAGAGGGCAGTACAGACAAGGTCTGAGGCATGGCTATGGAGTATA CAGGTTCTTCACTGGTGATTCTTACGCCGGAGAGTGGTATAACGGACAGAGCCATGGATTTGGAGTTCAGACATGCGCAGATGGTAGTTGCTATGTTGGT GAATTCAAGTGTGGTGTTAAGCATGGCCTTGGAGTCTATCATTTCAGAAATGGAGATCGATACGGTGGAGAGTACTTTGGAGACAAGATCCATGGATTCG GTGTTTACCATTTCGCGAATGGCCATTGCTACGAAGGGTCTTGGCACGAAGGGAGGAAGCAAGGTTACGGGATGTACATTTTCCGGAATGGTGATACGAG ATGCGGGGAATGGGATGGAGGAATCATTAAGATTCCCTTATCGCCACAAACCGAAGCAGTCCTCCGAGCAGTGCAGGCTGCAAGGAAGACTGCTGCCAAT GCGGTCAAAGTTTGTCGAGTAGACGAACAAGTGAACCGGTCAGTTCAGGCAGCGAACCGGGCCGCCACAGCCGCCAGAGGGGCTGGGGGGCAAAGTGGTG CGAGAAGCAAAGAGAGGAGTTCAGAACAGAATGGATGGCAAATTTTGTGA
AA sequence Show only first row Show all	>Lus10028062 pacid=23181174 polypeptide=Lus10028062 locus=Lus10028062.g ID=Lus10028062.BGIv1.0 annot-version=v1.0 MGSQGKLTRSASSFLRSSPTVRSSIHSLHSLSSMAEEDLTTPLRPPASEEDDKEKGKEDRRRRPHRCGSSWTPRRTGSTRFTPVLTMVSIAFFSFFSLSF FLFFYLRRDEIPTSENLLLGLIFIAITLFFASKNKSLINQNLYLIKQLWDENGRRFCVFASRSAKSSNKQVKWFIGESDSSISVKIRNENKVIREGVEFY SNGDYYEGEFHKGKCNGSGVYNFFVNGRYEGDWIDGRYDGYGIESWARGSRYRGQYRQGLRHGYGVYRFFTGDSYAGEWYNGQSHGFGVQTCADGSCYVG EFKCGVKHGLGVYHFRNGDRYGGEYFGDKIHGFGVYHFANGHCYEGSWHEGRKQGYGMYIFRNGDTRCGEWDGGIIKIPLSPQTEAVLRAVQAARKTAAN AVKVCRVDEQVNRSVQAANRAATAARGAGGQSGARSKERSSEQNGWQIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	2.6	0.8919
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	4.2	0.8615
AT1G54740			Protein of unknown function (D...		Lus10029969 [exp]	4.9	0.8201
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	4.9	0.8477
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10000105 [exp]	11.3	0.8503
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	15.3	0.8461
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	16.7	0.8473
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	19.3	0.8132
AT1G60783			unknown protein		Lus10006204 [exp]	19.5	0.8271
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	19.9	0.8367

Compare expression of checked genes

Lus10028062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.