Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60360 185 / 1e-55 RING/U-box superfamily protein (.1) AT3G56580 101 / 2e-24 RING/U-box superfamily protein (.1.2.3) AT2G40830 101 / 4e-24 RHC1A RING-H2 finger C1A (.1.2.3) AT3G19950 97 / 1e-22 RING/U-box superfamily protein (.1) AT5G59550 91 / 4e-20 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 89 / 2e-19 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G10815 85 / 3e-19 RING/U-box superfamily protein (.1) AT5G56340 86 / 2e-18 ATCRT1 RING/U-box superfamily protein (.1) AT2G39720 84 / 7e-18 RHC2A RING-H2 finger C2A (.1) AT4G26400 84 / 1e-17 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025612 [exp] 560 / 0 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10030755 [exp] 107 / 2e-26 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 105 / 6e-26 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 103 / 2e-25 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10001582 [exp] 91 / 3e-21 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10040783 [exp] 90 / 2e-20 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020258 [exp] 92 / 6e-20 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10017383 [exp] 84 / 8e-20 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10003698 [exp] 88 / 2e-19 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G085800 [exp] 231 / 3e-73 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 106 / 3e-26 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 105 / 1e-25 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.015G028400 [exp] 100 / 7e-24 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 100 / 1e-23 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 94 / 1e-21 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G127600 [exp] 93 / 3e-21 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 91 / 2e-20 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 90 / 6e-20 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G126700 [exp] 89 / 8e-20 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10028063 pacid=23181108 polypeptide=Lus10028063 locus=Lus10028063.g ID=Lus10028063.BGIv1.0 annot-version=v1.0 ATGTCATTAAGCCCGCCGAGAACCCGAGCCTCCGCCACCTCCGACGAGGATGGCAGCACAAGATCCTTTCAGCTCTATTGGTGCTTCCAATGCCATCGTG CAGTCTCCATCTCTACCCCGACCAATGCCACCACACTAAACGCCCCGACATCTCAGCCTGCGACATGCCCTCGATGTTCGGGGCATTTCATTGTTGAGAT CAATACCAACAATAACAACAACGGTCGGCGACGGCCTAGACTGGTGGTCAACTTCACCGAATTCGATCCTTCCCCTGAAGCTCGATTGCTCGAGGCTCTG TCTCTAGTCCTGGACCCGCCACTTCTAGGAACAACAGCACCACCGGAGACCGGCTTCCCCCGTGGTCGAGATACATGGCCGCGAAGAAGGCCTACCGAGG GTGGGGTTGGCTCAGATTTGAACGTCCCCACTACGGGGAGGCGGAGGCACCGGAGTTTCGACGACGGAGGGATGTTTCAGCCGACGACGCGGAGGACGAG AGCGTGGATCATCCTCCGGCCCGTGGGCGGCCCAACTGCACCAGCCCGACCTGTTTCAAGGACCAACATTTTCTCGCCAAGGAGGGTGGATCCTCGGGAC TACTTCACTGGACCTAGCTTGAACGAATTGATCGAGCAGATCACTCAGGATGACCGGCCTGGCCCGGCTCCAGCTGCTGAGTCGGCCATCGAGGCGATCC CCAGAGTGGAGATTCGAGAGGCACATTTGGCGGGGAATAACGACTATGATTCATGTCCGGTGTGTAAGGAAGAGTTTAAGGTTGGAGGTGAAGCTAGGGA GTTACCTTGCAAGCACATTTACCACGATGAGTGTATCGTCCCTTGGCTGAGATTGCATAATTCTTGCCCGGTCTGTCGCAAGGAGATTCCGGCTGTGAGC CGCAGTGAGGACGAAGAAACCGACGACGGTGGAGGAACGTGCTGGAGGTTGAGGAGGCAGCTGGCGTCGATGTGGCCATTTAGTCGTCCTAGATATGCAA GAGTTATGCCTAATGACTCTGTTCTTGCTAATGATAATGCTAATCCAAATGCTCCAAGGAGAGGTTGGAATTGA
AA sequence Show only first row Show all	>Lus10028063 pacid=23181108 polypeptide=Lus10028063 locus=Lus10028063.g ID=Lus10028063.BGIv1.0 annot-version=v1.0 MSLSPPRTRASATSDEDGSTRSFQLYWCFQCHRAVSISTPTNATTLNAPTSQPATCPRCSGHFIVEINTNNNNNGRRRPRLVVNFTEFDPSPEARLLEAL SLVLDPPLLGTTAPPETGFPRGRDTWPRRRPTEGGVGSDLNVPTTGRRRHRSFDDGGMFQPTTRRTRAWIILRPVGGPTAPARPVSRTNIFSPRRVDPRD YFTGPSLNELIEQITQDDRPGPAPAAESAIEAIPRVEIREAHLAGNNDYDSCPVCKEEFKVGGEARELPCKHIYHDECIVPWLRLHNSCPVCRKEIPAVS RSEDEETDDGGGTCWRLRRQLASMWPFSRPRYARVMPNDSVLANDNANPNAPRRGWN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	0	1
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	1.7	0.9584
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	2.4	0.9544
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	3.7	0.9432
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	5.3	0.9513
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	6.0	0.9517
AT4G16640			Matrixin family protein (.1)		Lus10004728 [exp]	7.3	0.9208
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	7.4	0.9465
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	7.9	0.9358
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	9.4	0.9360
AT1G60360			RING/U-box superfamily protein...		Lus10025612 [exp]	10.0	0.9358

Compare expression of checked genes

Lus10028063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.