Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44835 347 / 7e-120 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025613 [exp] 582 / 0 AT1G44835 359 / 3e-124 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175900 [exp] 397 / 4e-139 AT1G44835 377 / 2e-131 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2) Potri.002G085700 [exp] 0 / 1 AT1G44835 0 / 1 YbaK/aminoacyl-tRNA synthetase-associated domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04073 [flax] [poplar] tRNA_edit Aminoacyl-tRNA editing domain
Representative CDS sequence Show only first row Show all	>Lus10028064 pacid=23181206 polypeptide=Lus10028064 locus=Lus10028064.g ID=Lus10028064.BGIv1.0 annot-version=v1.0 ATGGAGCTTGGAATAAAATTTGAGCAGTATGAACATCCTGCTGTTTTGACCGTGGAAAGCCAGGCAAAATATGTCGGGGATAAAGTTGGTGGACTGAGTA AAACTTTATTCTTGAAGGACAAGAAAAGTAGGTTCTACATTGTTTCCGCTCTTGCCGATACTAAAGTAGATCTGAAAGTTCTGTCTCAAAGGCTTGGTTT GGGGAAAGGGGGCGTAAGAATGGCTCCTGAAGAAGCACTTGCCCAGATACTACAGGTTTCTCTAGGTTGTGTCACCCCATTTGCACTTGTGAATGAGTCA GCAAGAGATGTATCCTTGTTGTTGGACGAGGGATTCAAAAGCCAAGAGCACTGCTTCTTCCATCCGCTATCTAATGAAACATCAATATCTCTCAAAGCTA GTGCTTTAGACAAGTTTCTTGAATCAATTGGGAGAGAGCCCTCATACATCGACCTTGAGGCTAACCCCTCGGTAGGAAAGGATCAACCTCCAGATCTAGC TTCTCTTGTTCCATCGGGTACCATCGATATACCCGATGCTCCTAGCGTCCCTTCACAAGTCGAAAAGAAGTCTACGCCTGCTGCAGTGAAAGCTGCCAAG CCAAGCAGCACGGTAAAAAATGCGAAGGACAAAGAGTACAATTCAGCATCTCAACCAAATGCTTTTTCGCATCCTGATCTATTTGTGGAAGAGATACTGA ATAAGACTGCAGAACTGATGCTCTCCGAAATAAGCACGGTATCTTTTCGAACCTCTCTCATGCTCAACATGATAGGTAACTCCTTTGAACTCAAACTGAA TGGAACTTGTCCCCTGCAGCTAACTGGGGATGTTGCAAAGCAAGAAGCCATTGCTGAGAGTATCAGAAAGCGTCTCACTCCAGAACTACAACATCTCGCT CGAATGTTTCAGAACACGGCCTATTCACAAGGGTTCTACGCTGGTAGTAACAGTCCATCGAAGCGCGCATGA
AA sequence Show only first row Show all	>Lus10028064 pacid=23181206 polypeptide=Lus10028064 locus=Lus10028064.g ID=Lus10028064.BGIv1.0 annot-version=v1.0 MELGIKFEQYEHPAVLTVESQAKYVGDKVGGLSKTLFLKDKKSRFYIVSALADTKVDLKVLSQRLGLGKGGVRMAPEEALAQILQVSLGCVTPFALVNES ARDVSLLLDEGFKSQEHCFFHPLSNETSISLKASALDKFLESIGREPSYIDLEANPSVGKDQPPDLASLVPSGTIDIPDAPSVPSQVEKKSTPAAVKAAK PSSTVKNAKDKEYNSASQPNAFSHPDLFVEEILNKTAELMLSEISTVSFRTSLMLNMIGNSFELKLNGTCPLQLTGDVAKQEAIAESIRKRLTPELQHLA RMFQNTAYSQGFYAGSNSPSKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	0	1
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	6.1	0.8811
AT3G54190			Transducin/WD40 repeat-like su...		Lus10035613 [exp]	6.5	0.8468
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	7.3	0.8803
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	7.9	0.8507
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	13.5	0.8331
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	14.0	0.8747
AT5G41270			unknown protein		Lus10030018 [exp]	14.4	0.8414
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	14.5	0.8480
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	15.7	0.8671
AT5G13100			unknown protein		Lus10015761 [exp]	17.3	0.8191

Compare expression of checked genes

Lus10028064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.