Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77680 526 / 3e-170 Ribonuclease II/R family protein (.1) AT2G17510 158 / 3e-39 EMB2763 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025614 [exp] 896 / 0 AT1G77680 1048 / 0.0 Ribonuclease II/R family protein (.1) Lus10014833 [exp] 783 / 0 AT1G77680 1033 / 0.0 Ribonuclease II/R family protein (.1) Lus10009880 [exp] 514 / 5e-175 AT1G77680 363 / 5e-117 Ribonuclease II/R family protein (.1) Lus10009879 [exp] 502 / 6e-170 AT1G77680 337 / 9e-107 Ribonuclease II/R family protein (.1) Lus10029500 [exp] 157 / 7e-39 AT2G17510 1543 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Lus10039601 [exp] 85 / 5e-18 AT2G17510 249 / 2e-77 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086400 [exp] 629 / 0 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1) Potri.005G174800 [exp] 610 / 0 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1) Potri.007G059100 [exp] 159 / 8e-40 AT2G17510 1546 / 0.0 EMBRYO DEFECTIVE 2763, ribonuclease II family protein (.1.2) Potri.001G137401 [exp] 87 / 1e-19 AT1G77680 63 / 5e-12 Ribonuclease II/R family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00773 [flax] [poplar] RNB RNB domain
Representative CDS sequence Show only first row Show all	>Lus10028065 pacid=23181110 polypeptide=Lus10028065 locus=Lus10028065.g ID=Lus10028065.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGAGCAGTGACGAGTGCGGTCGGATCGGTGGTGGTTGAAAAGGTTGAAGATGGATTTGGCGGCGGCAATGCGAAGGAGAGGAAGAAGAATC GGCGCCGATCCAATCGGCAAACCAAGTCGAATTCTGTTAATCCGCCGCCTGTTTGTAGCTCGGTGAATGAAGTAAAGGAGTTACCATCTAATGCTCATGC ATCCAGTGATGCCAACAAGAAGAAAATACGCAATGCAGCACAAGATTGCTCTTTGTCGAGGCAAATTGATTCAGAAGCTCCTTCCATGGGCGAGCAAGTA CTCCCCACTGCGTCGAATGTAGTTTCCAACTCTTTGCCGATGATGCGTGATCAGTGTGAACACCTTGTGCCAGGTGATATTGGTGGATCATCATCCCTTT CAATGTCATGCCCAGACCCAGTTCATGATGAAGGCATGCGTGCAAATGGTGGTTTGTGTATGACGCACCCCCGGTTCGAAGGTCATCCACAAGGGAAAAT ATACAATCCGTACTGGTCAACGGAGGCTGTTAACGAGGCTTTGGAGAGAGGTGATGCGTTCAAATCGTTGTTTCGGGTAAATGCACACAATAGGCTTGAG GCATACTGCAAAGTTGATGGAATTCCGACAGATATTCTCATAAGTGGATATGCTGCACAGAACCGAGCTGTGAGTGGATTGTTAGAAGGTGATACTGTGG TCATCAAGATTGATCCTTTGTATTCCTGGACCAGAATGAAAGGGTCAAATGGACCCTCTAACAGATGTGAGCCGGTTGAAGATTCTTCAATACATCGCAG TGATTCAGTTGATGCAAGTGCAAAGGGTCAAACTAAGATGGATGAATTTGGTGCTTCCACGGTTTCTGTTAGCTTGATGCCCTCACAAGAGTTTTCTCGT AATGAAGAGAATGGATTACTGGCTTGTGACTTTGTTAATGGCTATAATAGTAGTGTTGAACCTTCTGTTCGACAAAACGGAGTTGAGAACTCTACAATGC AAGTTGAGAATGCATTGGAGAAATTATGTACATTCATGAATTTCTATCCATCAAAACGTCCTACTGGGAAAGTTGTAGCAATCATGGAGAAGTCTCCCCG GCGAGATCGGATTGTGGGTTTCCTCAATTCCAAGCAGTGGTTTTACTACAGGGAAGGATATGGAAAGGACCCTAGATGGAATACCAGTCCTTTACCCATA TCTGACAATGAGTACATCCAGGTGACTCCTACCGACCCAAAGTTCCCAAAATTGTCTGTCCGTGTGGGGAGTTTACCTAGTTGCATCAAGAAGAGAATGG AGGAGGGAGATAAAACACTGGACTCTGACTTAGTGGCCGCACATATTGAGAATTGGACTGAAGAAAGCCCTTCTCCACAAGCATGCATTACTCGTGTTTT TGGTCGCGGAAGTGAAATGGAGCCTCAGATTAATGCAATATTATATGAGAATGCAATTTGCGTTTCTGACTTCTCTCCAGAGTCACTTTTGTGCCTTCCT GGGAAGACCCAATGTTGCCTCCAGTTTTATCCGAGAATCTTGGCTCCCTCAATCCTGGATAAAGGTGATGTCATTGATCGTTGGATTGGCCGGACTGTTG TGAAATCAAGTTGCAAACTTTCATATGAACGTGCTCAGAAAATCATTGATGGTGATACTTGGAATGGAAATAGTGAAGGACTGCCACAATTGTACGGTAA ATTTGAATGGAACGATATTGTTAAGTCTGTCAAGGCTCTTCACAAACTTTCAAAGGTTTTAAGGAAAAGGAGGTTTGATGATGGGGCCCTACAACTGGAA AGTTCCAAGGTTGTTTTTCTATTTGATGAGTATGGCATGCTGTATGACTGTACCTTCAGTGAACTAAAGGAATCAAATTCACTTGTGGAGGAGTTCATGC TTTTGGCTAATACGACAACGGCAGAGATCATAAGTAGAGCTTTCCCCGAAAGTGCATTATTACGAAGACATCCTGAACCAAATCTGCGCAAGCTAAGAGA ATTCGAAACATTTTGTAGCAAGCATGGCTTTGTCTTAGATACTTCTTCGTCTGGTAAGCTTCATAGTTCACTGGAGTGGATCCGGGAGACACTTAAAGGT GATACAATGTTTATTGATATTCTCGTCACTTATGCTACAAAGTCGATGCAGCTGGCAACCTACTTCTGTAGTGGTGATCTGAGAAACAATGTCAATGACT GGGGTCATTATGCTTTGGCTGTCCCTCTATACACGCATTTTACTTCACCGTTACGGCGTTATTCTGACATCATAGTTCATCGTCTGCTGAGTGCTGTGCT CGAAGCTGAAAAATGTTACATGGATCGCCGCAAAATGTCACGTGTAGTTTTAAGAAATGAGGATATAAGGTGTTTCACTGGGATTAACTTCGACAGAGAT GCAGCTGAATCATTGGAAGGGCGGGAAGCGTTGTTGTCTGCAGGTCTAAAATTTAGAATCCCTTCTGCAAATTTACTTGCAGATCTAGCAGCGCATTGCA ATGATAGAAAAATGGCTAGCAGGCATGTCAAAGATTCCTGTAATAAGCTCTACATGTGGATGTTACTGAAGAAAAAGAAGGTTTTGTTGTCGGAAGCTAG AGTTGTAGGTCTCGGACCAAGGTTCATGTCTGTTTACATTCATAAACTTGCTATGGAACGCCGTATACACTATGATGAAGTCGAGGGGTTGTCGGCAGAA TGGCTTGAAGCAACTTCGACCTTGGTGCTTAGCTTATGCACCAACACACGCTCTCCCACAAGACCAGGTTCCAATTTCAGGAGGTCACTCAGCGAAGTGG CTTGGGTGGTAAATCCTTGCGACACAGAACTAGAACCTGCTCCGGCCTCCCAAAGACTCGATGGCGGTTGGATTTCAAGATTCGAAATTGATCCAGCAGT TTCTCCTCTTACTGTACGTATCCTCTCAACCATCCCGGTAGTTCTTCATGCACTCGGTGGTGATGATGGTCCCCTTGACATTGGGGTTAGCTTGTTCATC AGCTCGTATTTTAGCTGA
AA sequence Show only first row Show all	>Lus10028065 pacid=23181110 polypeptide=Lus10028065 locus=Lus10028065.g ID=Lus10028065.BGIv1.0 annot-version=v1.0 MKGGAVTSAVGSVVVEKVEDGFGGGNAKERKKNRRRSNRQTKSNSVNPPPVCSSVNEVKELPSNAHASSDANKKKIRNAAQDCSLSRQIDSEAPSMGEQV LPTASNVVSNSLPMMRDQCEHLVPGDIGGSSSLSMSCPDPVHDEGMRANGGLCMTHPRFEGHPQGKIYNPYWSTEAVNEALERGDAFKSLFRVNAHNRLE AYCKVDGIPTDILISGYAAQNRAVSGLLEGDTVVIKIDPLYSWTRMKGSNGPSNRCEPVEDSSIHRSDSVDASAKGQTKMDEFGASTVSVSLMPSQEFSR NEENGLLACDFVNGYNSSVEPSVRQNGVENSTMQVENALEKLCTFMNFYPSKRPTGKVVAIMEKSPRRDRIVGFLNSKQWFYYREGYGKDPRWNTSPLPI SDNEYIQVTPTDPKFPKLSVRVGSLPSCIKKRMEEGDKTLDSDLVAAHIENWTEESPSPQACITRVFGRGSEMEPQINAILYENAICVSDFSPESLLCLP GKTQCCLQFYPRILAPSILDKGDVIDRWIGRTVVKSSCKLSYERAQKIIDGDTWNGNSEGLPQLYGKFEWNDIVKSVKALHKLSKVLRKRRFDDGALQLE SSKVVFLFDEYGMLYDCTFSELKESNSLVEEFMLLANTTTAEIISRAFPESALLRRHPEPNLRKLREFETFCSKHGFVLDTSSSGKLHSSLEWIRETLKG DTMFIDILVTYATKSMQLATYFCSGDLRNNVNDWGHYALAVPLYTHFTSPLRRYSDIIVHRLLSAVLEAEKCYMDRRKMSRVVLRNEDIRCFTGINFDRD AAESLEGREALLSAGLKFRIPSANLLADLAAHCNDRKMASRHVKDSCNKLYMWMLLKKKKVLLSEARVVGLGPRFMSVYIHKLAMERRIHYDEVEGLSAE WLEATSTLVLSLCTNTRSPTRPGSNFRRSLSEVAWVVNPCDTELEPAPASQRLDGGWISRFEIDPAVSPLTVRILSTIPVVLHALGGDDGPLDIGVSLFI SSYFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77680			Ribonuclease II/R family prote...		Lus10028065 [exp]	0	1
AT1G77680			Ribonuclease II/R family prote...		Lus10025614 [exp]	4.0	0.8318
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	5.4	0.8533
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	5.9	0.8320
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	8.1	0.8343
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	11.4	0.8496
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	14.2	0.8418
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	14.3	0.8412
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	17.6	0.7734
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	19.5	0.8369
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026516 [exp]	24.0	0.8093

Compare expression of checked genes

Lus10028065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.