Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33390 582 / 0 ATFAS4 FASCIATED STEM 4, RNA helicase family protein (.1) AT2G47250 177 / 1e-45 RNA helicase family protein (.1) AT3G26560 177 / 8e-45 ATP-dependent RNA helicase, putative (.1) AT3G62310 170 / 3e-43 RNA helicase family protein (.1) AT1G32490 169 / 2e-42 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT5G13010 166 / 3e-41 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G26370 162 / 1e-40 RID1 RNA helicase family protein (.1) AT1G27900 160 / 2e-40 RNA helicase family protein (.1) AT2G35340 161 / 6e-40 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT4G18465 154 / 2e-38 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025616 [exp] 1943 / 0 AT1G33390 1175 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10036783 [exp] 177 / 2e-44 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 176 / 2e-44 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10036991 [exp] 173 / 2e-44 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 171 / 1e-43 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 165 / 9e-42 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 165 / 1e-41 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10031647 [exp] 167 / 2e-41 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 160 / 4e-40 AT3G62310 1300 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201400 [exp] 617 / 0 AT1G33390 1056 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Potri.012G034200 [exp] 179 / 3e-45 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 178 / 5e-45 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.015G024400 [exp] 176 / 2e-44 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.014G117900 [exp] 169 / 3e-43 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 169 / 5e-43 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 164 / 1e-41 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 166 / 3e-41 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.002G192500 [exp] 162 / 7e-41 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 154 / 2e-38 AT4G18465 1092 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10028066 pacid=23181166 polypeptide=Lus10028066 locus=Lus10028066.g ID=Lus10028066.BGIv1.0 annot-version=v1.0 ATGAAGACAGACGAGGACAGCAATGCGCTTATCATGCCAGCTCGAAACAATAAGAGGAAATCCCAGAATAAGGAGGAGAAGGAAAGGGCTGGTATGCTTT TGGAGAGTGTGAAGACCTTGGAGAAGTACAAGCTCCCCGAGGAAGCATTTGATCTTTTACGGTCTTCAAAAGACATATGTCGGGCTGAAACTGCCAAGGA AAAACGTAGAATGGCAGTACAGTTTTCGAAAGCAGGTTTAGAAGATCCAAATACTTTTCAACCTTTTAGGACGGTGGGTGAACATCCTGCATCCGACTCT GAAACAGAATCAACAGAAGAATTGTCGTCGCATGGCATCAACAAGGGCTTGGGAGGAGAAGCTCCGAAATGTAACGAGTCTGTCTCTCTGGTTTCTCGTC AACAAACAGTAAAAGGAAAGAAACTTCGTACTGATATTGTCCCTGTTTCCGAAGTTTCTGACAAGAAATATTCTGAAATGGATGACCAGAAGCCAACTCC TGGAAATGCAATAGACTATTCACCTTCTAAACATGATGGTGCTGTGGGAGAGGGCCTCAAATTGATGAATAAGTCAGAAGGAAGCTCTACTCTTCCATTG GCCAGCTCTAGCAAGTTTCATGGTTGTTCAACGGAACGGCAACATACTATCCCGACAGTGGTGCATGTAAAAAGGCCCGATGAAGTGGAAGCAAACAGGA AAGATCTTCCCATTATTATGATGGAGCAGGAGATAATGGAAGCCATCAATGAAAATCTCACAGTTATTATATGTGGAGAAACTGGGTGTGGTAAAACTAC TCAAGTTCCTCAGTTCCTATATGAAGCAGGTTTTGGGTCTAAGCAATCTGCTGTTCATGGAGGTGTTATTGGTGTTACTCAACCACGTCGTGTTGCTGTC CTTGCCACTGCCAGACGTGTGGCATTTGAACTTGGTGTTCGTCTTGGTAAAGAGGTTGGATTCCAAGTTAGACATGACAAGAGGATTGGAGACAGTTCTG CTATCAAGTTTATGACTGATGGAATTTTACTTCGAGAAGTTCAGAATGATTTCTTACTGAGGCGTTACTCGGTCCTTGTACTGGACGAGGCTCATGAGAG AAGCGTTAATACTGACATACTTATCGGGATGCTGTCTCGTGTCATTCAGCTTCGTCAGAAGAAATACCAGGACCAGCAAGCAATGATTGTTTCAGGACAA AAGATAAGCCCCGAAAGTATGGTATTTCCTCTTAAACTTGTGTTGATGAGTGCCACCATGAGAGTAGAGGACTTTATCTCCGGTAAAAGGTTGTTTTGCA GCCCTCCCCCTGTTGTAGAAGTTCCTACCAGACAGTTTCCCGTGAGCGTACATTTCTCAAAGAGAACAGAAGAAGTTGATTATATCGGTCAGGCTTTCAA AAAGGTTAAGGCTATCCATCAGAAGCTGCCACAAGGAGGCATCCTTGTCTTTGTTACTGGTCAAAGGGAAGTCGAATACTTGTGTCAGAAATTCAATAGA GATTTAACCAGGAAGCTGAAGAAGACGGATGAAAGGAACACGGGAAATAGCATGAGTGGAAAAATCGAGCCAACTGACATTGGGGGAATTAACATAAAGG ACATCAATGAGGCATTTGATTTTCCAGAGAATCCAGATGAGGATCAATCTGACTTTAGTGGGGATGAGTCGGATTTTTCTTCTCATTCTGAATCAGAGAG CGATCTTGAAGTTGAAGATCTAGTAGATGACATATCACTACAAAATGATGATGGCGTTATGTCTCCTGGTCTAGTTCGTGTCCTTCCTCTTTATGCTATG CTTCCTGCGGCAGAACAGCTCCGTATATTCGAGGAGATGAAGGAAGGGGAGCGGCTCATTGTCGTTGCTACGAATGTTGCCGAAACTTCTCTAACCATTC CAGGCATAAAGTATGTGGTTGATACCGGACGAGAAAAGGTGAAGACATACAACCCTTCTAATGGCATGGAGTCCTATGAAGTTCAGTGGATAAGTAAAGC ATCAGCTGCTCAACGTGCAGGAAGAGCTGGAAGAACTGGACCTGGACACTGTTATCGTCTCTACACAGCAGCAGCCTTTGGTAAACTTCCAGATTTCTCT TGTGCCGAAATATCTAAAGTGCCGGTGGATAGCATTGTTCTGATCCTGAAATCAATGAACATTGACAAGGTTCATAATTTTCCATTCCCTACTCCTCCGG AGACCACTGCACTGCTAGAAGCAGAACGATGTTTGAAAACTTTGGAAGCACTTGAGAACAATGGTAGGCTGACGTCATTGGGGAAAGCGATGGCTTGCTA TCCCATGAGTCCTCGACATTCTCGTATGCTCTTAACAGTTATCAACACTATGAGGAAGGTGAAAAGCTACGACCGAGCAAATTTGGTCCTTGCACACGCA GTTGCAGCAGCTGCAGCATTGAGTGTCTCCAATCCTTTTCAGTTCCAGTTCGGCACCAATCAAATCAACAGCAGCGGCACAGATCAGGATAAAAAATCCG ATGGTGACTTGAACGGTGACGGAAACATGTCGAAGGAAGAAAAAAGACGGAAGAAGCAACTAAAAGAAACCGCTAAAGCAACCCGTGCTAAATTCTCTAA TCCCACCAGCGATGCTCTCACCGTAGCTTATGCATTGAAGTCTTTTGAACTCTCGGAAACTCCTGCCAAGTTCTGCAGTGAATACTTATTGCATTTTAAG ACAATGGAAGAAATGAGCAAGCTAAGAAAGCAGCTTCTGCAACTGGTTTCCTCCCAGAGTGCTAGTTTCGCCTCCGATCATGATTTCGCGTGGGTTCACG GTACATTGGAACAAGTCGAACTCGCTTGGAGGACTCCATCCAATAAGAATCCCCTTTTGCTGAACGAGGAAGAGTTTCTGCGTGAAGCTATATGTGCTGG TTGGGCTGATAGGGTTGCCAAAAGGATACGACATAACTCGAAGCCGTCGGAAGGAGATTGGAAAGTTTCGGCACCTCGGTACAAAGCTTGCATGGTTGAA GAGACCGTCTTCCTCCATCGATATTCGTCTCTTTCGAGTTCATCGCCCGAGTTCTTGGTGTATAGTGAATTGCTACAGACTAAGCGGCCATACATGCACG AATCAACGAGCGTGAAACCCGAGTGGCTTGTCAAGCACGCTAGATCCATGTGCAGTTTTTCGACCGTAGACGATCCAAAGCCTTACTATGACCCAAAAAC CGACCAAGTGTTCAACTGGGTGAGTCCGACTTTCGGGCCTCATCTTTGGCAGCTTCCATTGCAGGCAGTACCTATAAAAAGCGAAACCGATAGGGTAAAG GTATTTGCTTGTGCCTTGCTGGAAGGACATGTCTTGCCGTGTTTGAGATCGGTGAGGAAGATGATGGCTGCTCGTCCTAGTACGATTCTTGAGAAGGAAG CGACAGGGGACCGACGTGTAGGTAATCTCGTGTTTAGAATGAAGGCGAGAAGTATAGACGGTTGTAAGAGATTGAGAGAGGTTTGGAAAGAACACCCTAT GGAATTGCATGGGGAAGTAATGGGGTGGTTTAACAAGAGCTTTCATGGTCAGCAGTTTGAACAGCTTTGGTCTCAGATACATGCTGAGATCCAAGTGACG CCGCAAAATCATGGTCTGTCCCGAAAATCGAAGAAATATGTTATAAGCTTGGATTTCGGTAGTATTTCCAAGGAAAACTACGAGCAGTTGAACGAGGCAC TCGAAGGGAGCGATCCTAATTGGACAGCCTTGACTCTAAAGGTTTTGTTAATCAATTTCATCAGCCACTCCAATTCAGCGATGAATAGAAGCTTTGTTTC AGATTTCAGTTTTCTGAATTTGGATTCTGTTTCGCCCAGCTCTGCACTAGTCTTGAATCTGCAAACAAATTGGTGCGATCTGCAAACTCGAATGCTGGCT CGCTGTGTGAGAAAGTTGCAGAGCTTGAGAAGCTTGTATCAGAATGATCGGAGGGACGATGAGAGAGCAGAGAAGGAAGAAGAAGAAGGAAGAAATGCAG AGAAGAAATGGATATGGATGAAAGGTCTGAAAACCATTAACCGATTCACTGAGTTTGGTTGA
AA sequence Show only first row Show all	>Lus10028066 pacid=23181166 polypeptide=Lus10028066 locus=Lus10028066.g ID=Lus10028066.BGIv1.0 annot-version=v1.0 MKTDEDSNALIMPARNNKRKSQNKEEKERAGMLLESVKTLEKYKLPEEAFDLLRSSKDICRAETAKEKRRMAVQFSKAGLEDPNTFQPFRTVGEHPASDS ETESTEELSSHGINKGLGGEAPKCNESVSLVSRQQTVKGKKLRTDIVPVSEVSDKKYSEMDDQKPTPGNAIDYSPSKHDGAVGEGLKLMNKSEGSSTLPL ASSSKFHGCSTERQHTIPTVVHVKRPDEVEANRKDLPIIMMEQEIMEAINENLTVIICGETGCGKTTQVPQFLYEAGFGSKQSAVHGGVIGVTQPRRVAV LATARRVAFELGVRLGKEVGFQVRHDKRIGDSSAIKFMTDGILLREVQNDFLLRRYSVLVLDEAHERSVNTDILIGMLSRVIQLRQKKYQDQQAMIVSGQ KISPESMVFPLKLVLMSATMRVEDFISGKRLFCSPPPVVEVPTRQFPVSVHFSKRTEEVDYIGQAFKKVKAIHQKLPQGGILVFVTGQREVEYLCQKFNR DLTRKLKKTDERNTGNSMSGKIEPTDIGGINIKDINEAFDFPENPDEDQSDFSGDESDFSSHSESESDLEVEDLVDDISLQNDDGVMSPGLVRVLPLYAM LPAAEQLRIFEEMKEGERLIVVATNVAETSLTIPGIKYVVDTGREKVKTYNPSNGMESYEVQWISKASAAQRAGRAGRTGPGHCYRLYTAAAFGKLPDFS CAEISKVPVDSIVLILKSMNIDKVHNFPFPTPPETTALLEAERCLKTLEALENNGRLTSLGKAMACYPMSPRHSRMLLTVINTMRKVKSYDRANLVLAHA VAAAAALSVSNPFQFQFGTNQINSSGTDQDKKSDGDLNGDGNMSKEEKRRKKQLKETAKATRAKFSNPTSDALTVAYALKSFELSETPAKFCSEYLLHFK TMEEMSKLRKQLLQLVSSQSASFASDHDFAWVHGTLEQVELAWRTPSNKNPLLLNEEEFLREAICAGWADRVAKRIRHNSKPSEGDWKVSAPRYKACMVE ETVFLHRYSSLSSSSPEFLVYSELLQTKRPYMHESTSVKPEWLVKHARSMCSFSTVDDPKPYYDPKTDQVFNWVSPTFGPHLWQLPLQAVPIKSETDRVK VFACALLEGHVLPCLRSVRKMMAARPSTILEKEATGDRRVGNLVFRMKARSIDGCKRLREVWKEHPMELHGEVMGWFNKSFHGQQFEQLWSQIHAEIQVT PQNHGLSRKSKKYVISLDFGSISKENYEQLNEALEGSDPNWTALTLKVLLINFISHSNSAMNRSFVSDFSFLNLDSVSPSSALVLNLQTNWCDLQTRMLA RCVRKLQSLRSLYQNDRRDDERAEKEEEEGRNAEKKWIWMKGLKTINRFTEFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	0	1
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	1.0	0.9528
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	1.7	0.9281
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	2.4	0.9360
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030625 [exp]	6.9	0.8976
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	8.1	0.9080
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	9.3	0.8375
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	9.8	0.9062
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	9.9	0.8595
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	9.9	0.9029
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	10.2	0.9005

Compare expression of checked genes

Lus10028066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.