Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35370 784 / 0 S-locus lectin protein kinase family protein (.1) AT4G32300 443 / 3e-143 SD2-5 S-domain-2 5 (.1) AT2G19130 282 / 1e-82 S-locus lectin protein kinase family protein (.1) AT5G24080 272 / 2e-82 Protein kinase superfamily protein (.1) AT1G34300 270 / 3e-78 lectin protein kinase family protein (.1) AT4G00340 258 / 7e-74 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 231 / 1e-67 Protein kinase superfamily protein (.1) AT1G61480 238 / 5e-67 S-locus lectin protein kinase family protein (.1) AT1G11330 237 / 2e-66 S-locus lectin protein kinase family protein (.1.2) AT1G61500 231 / 2e-64 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025617 [exp] 881 / 0 AT5G35370 469 / 2e-156 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 422 / 6e-135 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 422 / 6e-135 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 389 / 7e-123 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10031230 [exp] 306 / 2e-91 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10039732 [exp] 301 / 5e-90 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 295 / 1e-87 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 294 / 2e-86 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10031805 [exp] 286 / 3e-84 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086500 [exp] 912 / 0 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 712 / 0 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.018G027300 [exp] 415 / 2e-132 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 411 / 5e-131 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.019G119200 [exp] 327 / 3e-99 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 327 / 4e-99 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 314 / 2e-94 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 310 / 8e-93 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.015G026300 [exp] 308 / 6e-92 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.T084500 [exp] 302 / 3e-90 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10028067 pacid=23181242 polypeptide=Lus10028067 locus=Lus10028067.g ID=Lus10028067.BGIv1.0 annot-version=v1.0 ATGGGAACTCTTCCACTTTCCTCTGCTTTCCCTCTCTTCTTCTTTCACTGTTTACTTCTCGTCTCTTCAGCTCCTCCTTCCAAAGAGTTCATCTCCCCCA ACTTCACAGCAACCAACCTCCGATTCGTCGACAACTCCGGAGCTTTCCTCTTCTCCAAGAATGGCACCTTCAAAGCCGCCATCTTCAACCCCGGCGGTCA ACAGTCCAGATTCTACCTCTGCGTCATCCACTCTGCTTCCGGTACCGTCGTCTGGTCGGCGAATCGCGATTCCCCGATCTCCAATTCCGGAACCATGACC CTCACCGGAAACGGAATCACCATCTCCGACCACAAGGGCGCTCCGAAATGGTCCACTCCGTCGACCATCTCGAAATCCTCTGTTTCAGGCTTACACCTGA CCGAGTCGGGTAACCTCAGGTTGCTCGACCGGTCAAACGTTTCTGTCTGGGAAACGTTCGACAACCCGACGGATACAATTGTTGCCGGGCAGATACTACA GAGTGGGAAAATGCTGTCCGGCTCTGTTTCCAGCGAAGATTTTTCAACGGGGGATTACCGGCTCGGGTTTGCCGACTCGGATGCCGTGCTTACGTGGAGA AGGAAGACGTACTGGAAGCTATCGATGGATCCTAAAGCTTACACGAACTCGAATCACGTGGTGGATTTCATGACGGTGAACGGAACAGGGGTTTTCCTGT TCGGCCGGAACGGGACGAACCTTGTGATTCGGGTGGCTCTGCCTTCGGTAGAGTTCCGCATTGCAAAGCTGTCCCCTTCAGGACAGCTCGTCGTAAGCAG TTTCTCTAACGGGATGAAGGAGGAGCTAAACGGACCAAGTAATGTCTGTCGAATTCCGTTCATTTGCGGCGAAATGGGATTGTGCTCTGTTTCTTCAGGG GACAATCCGACTTGTCAATGCCCGTCAGGTTTCAGTCCAGCCAAAGATGCCAAACGAAGCAGTAGTAGTAATTCCAATTCCTTTGATGGATGCGTACCCA GCGACGGTTCATCGTTGGTACAATCCTGCAAGAATTCGACCTCGAATTCTTCATCATATGTAAGCATCGGGGACGGTGCGGATTATTTCGCCATCGATTT CTCCCAGCCGATGAACTTCGCGGTCAATTTGTCAGTCTGTCAGGATTTCTGCACACAGGACTGTTCTTGCTTGGGGATCTTCTACCACAATTCGTCCGGT TCGTGCTACGCAGTTGAGGATGATCTCGGATCCGTCATGTCGAATCCGGGTTCTGAAAATCATCAGGTGGGATTCAGCAAAGTTATGCAATCAGCCAAGA ACAATACAAAAGGCAATGAGGAATTAGTCAACAAAGGGAAGCAGCATCCGATTCCGTTGACCGCAATCATTCTCTTACCCTGCATTGCGTTCATAATCAT TTTCCCCACAGCTTTCCTACTATGGAGAAGGAGGAAGATTTCAAAACAACTGAAACGAAAGCTAAGCGACGCGGATGATTCATATTCATCAGAGGAAGAG CTGGATGCATTCTACATCCCGGGGTTACCGCTCCGGTTCGATTTCGAGGAGCTCGAGGAAGCAACCGAGAATTTCAAGGTTCAGATTGGATCGGGCGGAT TCGGATCGGTTTACAAGGGATCCCTGCCGGATAAGTCCGATGTTGCGGTGAAGAAGATAACCAATGTTGGGATACAGCGAAAGAGAGATTTCTGCACTGA GATTGCCATAATAGGGAACGTCCACCATGTCAATTTGGTGAAGCTGAGAGGATTCTGCGCTCAGGGGAGGCAGAGGCTGTTGGTTTATGAGTACATGAAT CGGGCCTCGCTCGACCGGACCTTGTTCGGAAATTCTGGTCCGGTTCTCGAGTGGCGCGAGCGGTGTGAGATTGCGTTGGGAACCGCGCGCGGTTTGGCGT ACTTGCACACTGGGTGCGAGCATAAGATCATACATTGCGATGTCAAGCCAGAGAATATTTTGTTGCACGATCAGTTCCAGGCGAAGATATCTGATTTCGG CCTATCGAAGTTGCTGGGGCCGGAGCAATCGAGCCTGTTCACTACGATGAGGGGTACACGTGGGTACCTGGCGCCGGAATGGCTGACGAATTCGGCCATT ACGGAGAAGACCGACGTGTACAGCTACGGGATGGTGCTGCTGGAGCTCGTCAGCGGGAGGAAGAACTGCTCGATGGTGAGATCGGCCAGCCACGGCATGG ACGACAGCAGCAGCGGAGGAGGAGGAGACCAGATTGGCGGAAGTGGAGGACATCAGTCCTCTACATCATCGCAATTTGCCATGATGGTGTACTTCCCACT ATTCGCGTTGGAGATGCACGAACAGGGGAAGTACATGGAACTGGCGGACCCCAGGTTAGAAGGGCGGGCGGGGAGCGAAGAGGTGGAGAAGTTGGTCCGG ATCGCACTATGTTGCGTGCACGAGGAGCCCTATTTAAGGCCCAGTATGGTGACGAGGAAGGTGAGGATGGGATCGAGCAGAGGGAAGCTTTACTGA
AA sequence Show only first row Show all	>Lus10028067 pacid=23181242 polypeptide=Lus10028067 locus=Lus10028067.g ID=Lus10028067.BGIv1.0 annot-version=v1.0 MGTLPLSSAFPLFFFHCLLLVSSAPPSKEFISPNFTATNLRFVDNSGAFLFSKNGTFKAAIFNPGGQQSRFYLCVIHSASGTVVWSANRDSPISNSGTMT LTGNGITISDHKGAPKWSTPSTISKSSVSGLHLTESGNLRLLDRSNVSVWETFDNPTDTIVAGQILQSGKMLSGSVSSEDFSTGDYRLGFADSDAVLTWR RKTYWKLSMDPKAYTNSNHVVDFMTVNGTGVFLFGRNGTNLVIRVALPSVEFRIAKLSPSGQLVVSSFSNGMKEELNGPSNVCRIPFICGEMGLCSVSSG DNPTCQCPSGFSPAKDAKRSSSSNSNSFDGCVPSDGSSLVQSCKNSTSNSSSYVSIGDGADYFAIDFSQPMNFAVNLSVCQDFCTQDCSCLGIFYHNSSG SCYAVEDDLGSVMSNPGSENHQVGFSKVMQSAKNNTKGNEELVNKGKQHPIPLTAIILLPCIAFIIIFPTAFLLWRRRKISKQLKRKLSDADDSYSSEEE LDAFYIPGLPLRFDFEELEEATENFKVQIGSGGFGSVYKGSLPDKSDVAVKKITNVGIQRKRDFCTEIAIIGNVHHVNLVKLRGFCAQGRQRLLVYEYMN RASLDRTLFGNSGPVLEWRERCEIALGTARGLAYLHTGCEHKIIHCDVKPENILLHDQFQAKISDFGLSKLLGPEQSSLFTTMRGTRGYLAPEWLTNSAI TEKTDVYSYGMVLLELVSGRKNCSMVRSASHGMDDSSSGGGGDQIGGSGGHQSSTSSQFAMMVYFPLFALEMHEQGKYMELADPRLEGRAGSEEVEKLVR IALCCVHEEPYLRPSMVTRKVRMGSSRGKLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35370			S-locus lectin protein kinase ...		Lus10028067 [exp]	0	1
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	3.3	0.8161
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	9.3	0.8120
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10032038 [exp]	13.2	0.8042
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	24.3	0.7910
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	30.4	0.7736
AT5G42340		PUB15	Plant U-Box 15 (.1)		Lus10016016 [exp]	35.2	0.7547
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	37.1	0.7857
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	37.8	0.7863
					Lus10017937 [exp]	39.0	0.7726
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	39.0	0.7865

Compare expression of checked genes

Lus10028067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.