Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08640 416 / 2e-146 ATFLS1, FLS flavonol synthase 1 (.1.2) AT5G63590 297 / 5e-100 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT5G43935 269 / 4e-89 ATFLS6, FLS6 flavonol synthase 6 (.1) AT5G63600 268 / 1e-88 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT4G22880 256 / 2e-83 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT2G38240 236 / 1e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63595 228 / 1e-73 ATFLS4, FLS4 flavonol synthase 4 (.1) AT5G05600 226 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 224 / 1e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G63580 201 / 2e-63 ATFLS2, FLS2 flavonol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025620 [exp] 647 / 0 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10025619 [exp] 310 / 1e-104 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10006709 [exp] 253 / 9e-81 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 244 / 2e-78 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10005037 [exp] 224 / 1e-70 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 213 / 1e-66 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 210 / 2e-65 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 210 / 5e-65 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 207 / 3e-64 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G086700 [exp] 514 / 0 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.019G014454 [exp] 431 / 3e-152 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 405 / 3e-142 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 396 / 1e-138 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.003G119100 [exp] 261 / 2e-85 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.001G113100 [exp] 259 / 1e-84 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.006G101200 [exp] 232 / 9e-74 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 231 / 2e-73 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 229 / 7e-73 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 225 / 5e-71 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028068 pacid=23181163 polypeptide=Lus10028068 locus=Lus10028068.g ID=Lus10028068.BGIv1.0 annot-version=v1.0 ATGGGAATTGTAAGGGTTCAGGACATAGCCTTGGAATCGAAGGAGAAGATCCCGGAGGAGTTTGTGAGGCACGAGGCCGAGCAGCCAGCAATCACGACCG TTAGTGGGGTCACCTTGGAGGTCCCCACGATTGACCTGAGCGATCCGGACCAGGAAAAGGTTCAGAGGCTGGTGGTGGAAGCCAGCAGAGAATGGGGAAT GTTCCAGATCGTGAACCACGGCATCCCTACGGAGCTCACTGAGAGGCTCCAGGATGTCGGGAGGACGTTCTTCGAGCTGCCGTTGGAGGAGAAGGAGCTT TATGCAAAGTCGCCAGGTTCGATAGAAGGGTATGGGACCCTTCTTCAGAAGGAAGTTGAAGGCAAGAAAGGATGGGTTGATCATTTGTTTCACAAAGTTT GGCCTCCTTCTGCCGTTAACTATAGGTTTTGGCCAAGGAATCCAGCTTCCTATAGGGAGGTGAATGAGGAGTATACAAAGCAGTTGCATGGAGTAGTGAA CAAGCTATACAATAGCCTCTCCTTAGGGCTAGGTTTGGAAGCTGGTGAAGTAAAGGAAGCACTTGGTGGGGATGATTTGGTCTACCTAATGAAGATCAAC TACTACCCGCCTTGTCCACGACCCGATCTAGCCCTCGGCGTCGTGGCCCACACCGACATGTCCTCGCTCACCCTTCTCGTCCCCAACGACGTTCAGGGAC TCCAAGCTTCAAAGGATGGACAATGGTACAACGTTAGGTACATCCCTAACGCCCTTGTCGTCCACGTTGGCGACCAGATGGAGATAGTGAGCAATGGATT CTACAAGAGCGTGTTGCACAGGACAACAGTGAGCAAGGACCAGACAAGGATGTCTTGGCCGGTGTTCTTCGAGCCACCAACGGACCACGTGGTGGGCCCT CACCGGAAGCTGGTGAGCGAGAACAATCCGGCCAAGTATAAGACCAAGAAGTTTGGAGAGTACTGTTACTGCAAGCTCAACAAGATTCCTCAGTAG
AA sequence Show only first row Show all	>Lus10028068 pacid=23181163 polypeptide=Lus10028068 locus=Lus10028068.g ID=Lus10028068.BGIv1.0 annot-version=v1.0 MGIVRVQDIALESKEKIPEEFVRHEAEQPAITTVSGVTLEVPTIDLSDPDQEKVQRLVVEASREWGMFQIVNHGIPTELTERLQDVGRTFFELPLEEKEL YAKSPGSIEGYGTLLQKEVEGKKGWVDHLFHKVWPPSAVNYRFWPRNPASYREVNEEYTKQLHGVVNKLYNSLSLGLGLEAGEVKEALGGDDLVYLMKIN YYPPCPRPDLALGVVAHTDMSSLTLLVPNDVQGLQASKDGQWYNVRYIPNALVVHVGDQMEIVSNGFYKSVLHRTTVSKDQTRMSWPVFFEPPTDHVVGP HRKLVSENNPAKYKTKKFGEYCYCKLNKIPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10028068 [exp]	0	1
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	2.8	0.8935
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	3.0	0.9133
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10006673 [exp]	3.0	0.8833
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	24.8	0.8593
AT3G14460			LRR and NB-ARC domains-contain...		Lus10032782 [exp]	26.7	0.8091
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	30.2	0.8448
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	33.8	0.8490
AT4G18425			Protein of unknown function (D...		Lus10015394 [exp]	36.2	0.8565
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10024601 [exp]	36.6	0.8472
AT4G34500			Protein kinase superfamily pro...		Lus10023574 [exp]	39.3	0.8139

Compare expression of checked genes

Lus10028068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.