Plant FIBer expression Database

Lus10028069 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008159
[exp]
209 / 3e-68 ND /
Lus10008157
[exp]
197 / 8e-64 ND 38 / 0.006
Lus10028040
[exp]
124 / 2e-35 AT3G19540 152 / 7e-43 Protein of unknown function (DUF620) (.1)
Lus10013987
[exp]
82 / 2e-18 AT3G23950 59 / 1e-08 F-box family protein (.1)
Lus10003349
[exp]
76 / 3e-16 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2)
Lus10007302
[exp]
74 / 8e-16 AT1G15680 49 / 4e-06 F-box family protein (.1)
Lus10007303
[exp]
73 / 2e-15 AT3G23950 45 / 6e-05 F-box family protein (.1)
Lus10013986
[exp]
73 / 2e-15 ND 55 / 7e-08
Lus10040838
[exp]
72 / 5e-15 AT3G23950 57 / 2e-08 F-box family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10028069 pacid=23181138 polypeptide=Lus10028069 locus=Lus10028069.g ID=Lus10028069.BGIv1.0 annot-version=v1.0
ATGATATTTTTGGAAGTTGTTGAAGGAGTAGGTGATAGTTCAAGGTATGCCTTGAGTGTTTGGAGACTGGAAGCGGAAGATGATGAATATTGGTGGACCA
AAAAATGTGATATAGTGTTGAAGACGGCCACTTCATCATCATCAGCATTATTATGGGGTAAGTATGAACTTGACAAGTGCTCTGTGCTCTGTCTGCATCC
GGAGAAGCCGGAAATTGTCTTCTTTAGATACATGGAGGATTGTGTCTTCTCCTTTGATTCGAGTATGGGGACGGCTGTAGAGCCAGAGTTGCTTTCTGCT
GTCAAATTAAAGAGCTATGAAGACAGTTGGAGGGTGTTTCAGCCTAGAGTCTCTGGCTGGCCTACTCCGATTCCAAGGTACGACAAGTTTCGAGGTATCT
ACGATGGAAGATTCGATTGCTGGGTTCAGACAAGAGTGAGGAATCCCAAGCCTTGGATTAACAAGGTGGTCATTGAGTTGCGTTCGGAAGAAGCAGAAAT
GCAGTGA
AA sequence
>Lus10028069 pacid=23181138 polypeptide=Lus10028069 locus=Lus10028069.g ID=Lus10028069.BGIv1.0 annot-version=v1.0
MIFLEVVEGVGDSSRYALSVWRLEAEDDEYWWTKKCDIVLKTATSSSSALLWGKYELDKCSVLCLHPEKPEIVFFRYMEDCVFSFDSSMGTAVEPELLSA
VKLKSYEDSWRVFQPRVSGWPTPIPRYDKFRGIYDGRFDCWVQTRVRNPKPWINKVVIELRSEEAEMQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10028069
[exp]
0 1
AT3G19540 Protein of unknown function (D... Lus10028070
[exp]
1.0 0.9776
AT2G03500 GARP Homeodomain-like superfamily p... Lus10023857
[exp]
2.8 0.9663
AT5G42930 alpha/beta-Hydrolases superfam... Lus10042648
[exp]
4.9 0.9598
AT5G03980 SGNH hydrolase-type esterase s... Lus10009325
[exp]
5.4 0.9178
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10028243
[exp]
5.5 0.9627
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10032424
[exp]
5.9 0.9567
AT5G22460 alpha/beta-Hydrolases superfam... Lus10020604
[exp]
6.3 0.9327
AT3G22640 PAP85 cupin family protein (.1) Lus10022072
[exp]
7.3 0.9529
AT3G54100 O-fucosyltransferase family pr... Lus10021119
[exp]
7.9 0.9528
AT1G54790 GDSL-like Lipase/Acylhydrolase... Lus10029981
[exp]
8.8 0.9452

Lus10028069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.