Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 104 / 8e-26 Protein of unknown function (DUF620) (.1) AT1G49840 97 / 4e-23 Protein of unknown function (DUF620) (.1) AT1G27690 86 / 4e-19 Protein of unknown function (DUF620) (.1) AT1G79420 71 / 6e-14 Protein of unknown function (DUF620) (.1) AT3G55720 69 / 2e-13 Protein of unknown function (DUF620) (.1) AT5G05840 68 / 3e-13 Protein of unknown function (DUF620) (.1) AT5G66740 62 / 4e-11 Protein of unknown function (DUF620) (.1) AT5G06610 57 / 2e-09 Protein of unknown function (DUF620) (.1) AT1G75160 54 / 2e-08 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013891 [exp] 129 / 9e-35 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 107 / 1e-26 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 103 / 1e-25 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10028040 [exp] 101 / 1e-25 AT3G19540 152 / 7e-43 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 100 / 1e-25 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10026604 [exp] 91 / 3e-22 AT3G19540 249 / 6e-81 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 74 / 4e-15 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 74 / 4e-15 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 67 / 1e-12 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297500 [exp] 122 / 2e-32 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 116 / 5e-30 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 108 / 4e-27 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 77 / 3e-16 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 75 / 1e-15 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 72 / 1e-14 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G181500 [exp] 69 / 1e-13 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 67 / 5e-13 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 67 / 9e-13 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 65 / 3e-12 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10028070 pacid=23181247 polypeptide=Lus10028070 locus=Lus10028070.g ID=Lus10028070.BGIv1.0 annot-version=v1.0 ATGTTCAGGACGCCTTATGCTGCGGCTTACAAGAGCTCTGATCTGAAGGTGCTGCTTGGTGTCATGGGTGCGCCGTTGGCTCCGGACGTTAGCACCATGG CTCCTTTGCTTCCTATGCTCAGCATTAAAGACACTCCCATTGACTTGGTTTCTGCAGGAAACATCATCTGCTCAGTACATATTGCAGAAGTACACTGCTG CATCTGGAGGGCAGAAGCTGCAGAACTCCATCGGGAATTCTGTGCGAGGGGGAAGATTAAGATGTTGACCTTGGAATTCGAGAACGCCACGAAAGTGTTG AAGAATCAGAACGGTGCTTGTGGTGCCAAGGCGGGTGTATTCGTTCTCTGTCAGATGAATCCAGACATGTGGTCTGTTGAGGTTGCTGTAGGTGGCAGTC TGGCTGCGATGGCAAGCTTGTTTGGCGCCAAACGTCTTTGCTTCGCGGCCGCACTACTAAAGGACCGGTTCGACCCCTTTGTCGTGCTCTTCAGACCCGT GGAAGGAATCATGATCGCACATTCTGGGCATTCTGTGGCGACCCTGGCCAAATATGGTGAGGTGGCTATGAGGAAACACAAGACGAAGATGGAAGAAACT TGGACCATTGAGGAAGTGGGTTTCAATGTTCCAGATCTCTCATCTGACTTTTTCATCCCTCCGGTGGCTATACAGAGTTGCAGCGATTGA
AA sequence Show only first row Show all	>Lus10028070 pacid=23181247 polypeptide=Lus10028070 locus=Lus10028070.g ID=Lus10028070.BGIv1.0 annot-version=v1.0 MFRTPYAAAYKSSDLKVLLGVMGAPLAPDVSTMAPLLPMLSIKDTPIDLVSAGNIICSVHIAEVHCCIWRAEAAELHREFCARGKIKMLTLEFENATKVL KNQNGACGAKAGVFVLCQMNPDMWSVEVAVGGSLAAMASLFGAKRLCFAAALLKDRFDPFVVLFRPVEGIMIAHSGHSVATLAKYGEVAMRKHKTKMEET WTIEEVGFNVPDLSSDFFIPPVAIQSCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	0	1
					Lus10028069 [exp]	1.0	0.9776
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	3.2	0.9521
					Lus10034192 [exp]	3.5	0.9554
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	3.7	0.9612
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	4.2	0.9589
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	9.2	0.9352
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10000926 [exp]	11.2	0.9119
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	11.2	0.9513
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033256 [exp]	11.4	0.9369
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	13.3	0.9501

Compare expression of checked genes

Lus10028070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.