Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64310 545 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 301 / 1e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 300 / 7e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 291 / 5e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 293 / 5e-89 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 287 / 1e-88 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 281 / 1e-85 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 283 / 2e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 281 / 5e-85 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 276 / 3e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025624 [exp] 1070 / 0 AT1G64310 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 304 / 3e-93 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 302 / 6e-93 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 298 / 9e-93 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 296 / 1e-92 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 298 / 1e-88 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 292 / 1e-88 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 285 / 1e-88 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 287 / 1e-87 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082366 [exp] 759 / 0 AT1G64310 604 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 312 / 2e-96 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 308 / 5e-96 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.006G105700 [exp] 295 / 2e-91 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 291 / 1e-89 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G145000 [exp] 286 / 5e-89 AT1G03540 721 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G071800 [exp] 289 / 6e-89 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 285 / 1e-87 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G135600 [exp] 281 / 7e-87 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G243800 [exp] 279 / 9e-87 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028074 pacid=23181111 polypeptide=Lus10028074 locus=Lus10028074.g ID=Lus10028074.BGIv1.0 annot-version=v1.0 ATGATCAGCCGATTCAACCGACTTCTTTCGGAGCTCTCTCAGACTCACCTATCAGCAGCTAGAACCAAGCAGCTACACGCTTTCATCACCAGAACCCACC TATTCCTCGACCCCTTCTTCGCCACCAAGCTCTTGAGGATCTACTCGAGAAATGGCGACCTCCAATCTGCACGCCGCCTGTTCGACAAAAGTCCGCAACG AAGCATCTACCTCTGGAACTCCATTATCCGAGCTCACGCGCAAGCGCATTTGTTCGAGGATGCATTGTTCCTGTACAGAAGTATGCTCCGAACGGAGACG CAGCCTGATAATTTTACTCACGCCTGCGTTTTACGGGCTTGTCATGAAAACTTTGACACGGATGGACTGAGGATTGTTCACGGAGAAGTAATAGTTTCTG GATTTGGGTTGGATTCGGTAACCTGTAGCGCATTGGTGACGGCTTATTCAAAAATCGGCCTTGTTGGTGAGGCGAGTAAAGTGTTTTATAGGATGGTCGA TCCGGATTTGGTTCTGTGGAATGCTATGATTTCTGGGTACTGTTACGAGGGGTTTTGGGATAAAGGATTGCAGTTGTTTAATGAGATGAGGAGAAATGGA GAGCAAGAACCAGATGGTTACACTTTTGTGGGGCTAATCTCGGGGTTTATGGATTCGAGTTTGTTAGGAGTTGGGCAAGGAATCCATGGTTTGTGCTTGA AAAGTGGGTTTGAAGATCATGGTCATGTAAGCAGTTCGCTTGTGACTTTGTACTCTAGGTTTAAGTTCATGAATTCGGCGTATGGTGTGTTTCATAACCT ACACCAGCCAGATTTCGTAACATGGTCCTCTTTGATAACTGGATATCTCCAATCCGGAGAGTATGAAAAAGCTGTGATTCATTGTAGGAAGCTTCATGCA GAAAGCAAGAAGCTGGATCACATCTTAATAGCTAGCTTACTTGTAGCTGCTGCACGCTCAGCAGATATTGGACTTGGTACACAAATTCATGGTTATGCTG TTCGGCACGGGCTTGAATCGGATGTCATGGTCTCTTCTTCTCTGATAGACGTGTATTCGAAATGTGGGTTTCTAGGACTAGGGATTCAACTCTTTCGAAG TATAGCTAACGTGAATATTACTTCTTATAACACCGCAATCTCAAGCCTCGGCTTGAATGGACTTGCCTCACATGCTTTTCAACTGTTTGAAGAGGCATTG AAGAATGGCTTAGAACCTGATGAGTCTACATTCTCTGCTCTACTTTGCACTTGTTGTCACACTGGCCATGTTAATCATGGCCGGGAAATTTTCAGGAGGA TGCAAGATGAATTCTGCATCCAAGCAAGAACAGAGCACTGTGTTCATTATGTAAAGCTTCTAGGAATGGCAGGATACTTGGATGAGGCATACAATTTTAT CTTGTCACTGGGACAGCCCGTGGATTCAGGTATTTGGGGAGCTCTCTTATCGTGTTGTGATGCTTACGGAGATTCAGAGTTGGCAGAAGTTATAGCCCAG CTTCTCTTCAGTCAGGAGCCTAGAAATGGTGCTTACCGAGTCATGCTATCCAACATGTATGCGAGTGATGGAAAATGGGAAGATGTTAGGCAGATGAGAA ATGGAATGGCAGTTTCTGGAGTGATTAAGAGACCTGGCCTTAGTATGATTGCAGTTGAAGGGAGTGGCACTTAA
AA sequence Show only first row Show all	>Lus10028074 pacid=23181111 polypeptide=Lus10028074 locus=Lus10028074.g ID=Lus10028074.BGIv1.0 annot-version=v1.0 MISRFNRLLSELSQTHLSAARTKQLHAFITRTHLFLDPFFATKLLRIYSRNGDLQSARRLFDKSPQRSIYLWNSIIRAHAQAHLFEDALFLYRSMLRTET QPDNFTHACVLRACHENFDTDGLRIVHGEVIVSGFGLDSVTCSALVTAYSKIGLVGEASKVFYRMVDPDLVLWNAMISGYCYEGFWDKGLQLFNEMRRNG EQEPDGYTFVGLISGFMDSSLLGVGQGIHGLCLKSGFEDHGHVSSSLVTLYSRFKFMNSAYGVFHNLHQPDFVTWSSLITGYLQSGEYEKAVIHCRKLHA ESKKLDHILIASLLVAAARSADIGLGTQIHGYAVRHGLESDVMVSSSLIDVYSKCGFLGLGIQLFRSIANVNITSYNTAISSLGLNGLASHAFQLFEEAL KNGLEPDESTFSALLCTCCHTGHVNHGREIFRRMQDEFCIQARTEHCVHYVKLLGMAGYLDEAYNFILSLGQPVDSGIWGALLSCCDAYGDSELAEVIAQ LLFSQEPRNGAYRVMLSNMYASDGKWEDVRQMRNGMAVSGVIKRPGLSMIAVEGSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	8.8	0.8329
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10036029 [exp]	14.7	0.8186
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	15.3	0.8422
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	15.6	0.8490
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	15.7	0.8521
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10033378 [exp]	20.0	0.7957
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	20.4	0.8351
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	20.5	0.8504
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	24.3	0.8429
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	25.6	0.7844

Compare expression of checked genes

Lus10028074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.