Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77700 161 / 9e-49 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 109 / 1e-29 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 109 / 1e-29 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 107 / 8e-29 ATLP-3 thaumatin-like protein 3 (.1) AT1G73620 107 / 8e-29 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36000 105 / 2e-28 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 107 / 3e-28 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G19320 103 / 2e-27 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 103 / 3e-27 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 100 / 2e-26 PR-5, PR5 pathogenesis-related gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025629 [exp] 247 / 6e-82 AT1G77700 377 / 4e-130 Pathogenesis-related thaumatin superfamily protein (.1) Lus10031346 [exp] 110 / 1e-31 AT1G73620 189 / 3e-62 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 112 / 8e-31 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10013561 [exp] 110 / 2e-29 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 110 / 2e-29 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 110 / 3e-29 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041901 [exp] 109 / 3e-29 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 108 / 1e-28 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013560 [exp] 106 / 7e-28 AT1G75800 173 / 6e-70 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087100 [exp] 166 / 2e-51 AT1G77700 384 / 2e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G173900 [exp] 159 / 9e-49 AT1G77700 316 / 2e-107 Pathogenesis-related thaumatin superfamily protein (.1) Potri.003G020100 [exp] 131 / 1e-37 AT1G77700 274 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G210400 [exp] 129 / 1e-36 AT1G77700 273 / 1e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 112 / 4e-30 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 110 / 1e-29 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 108 / 5e-29 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 107 / 2e-28 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 106 / 6e-28 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112600 [exp] 106 / 7e-28 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family CL0072 [flax] [poplar] Ubiquitin PF03671 [flax] [poplar] Ufm1 Ubiquitin fold modifier 1 protein
Representative CDS sequence Show only first row Show all	>Lus10028079 pacid=23181119 polypeptide=Lus10028079 locus=Lus10028079.g ID=Lus10028079.BGIv1.0 annot-version=v1.0 ATGGTGGTGAACCCGATCAACGGGCGTGGAAACTGCAGTGTGACAGGCTGCGGCGGAGACCTGAGGCCCTTGTGTCAGTCGGAGCTCTCGGTCAAAGGAG GAAGAGGGAAGGTGGTGGGATGTAGGAGCGCGTGTGACGTGTTCGACACTGACGAGTACTGCTGCCGTGGGGTATACGGTAACCCGGTGGTTTGCCAGCC GACGTATTACTCGAAGAAGTTTAAGGATGCTTGCCCTACTGCTTATAGTTATGCATACGATTATCCCACTAGCATTTTCACTTGCTCCGGCACCGATTAT GTCGTTACCTTCTGCTCTTCCAAGTTTAGCGTGCCGGAGGCTGCTCCGTTCACCGCCGTTATGAGATTCATAGCTAAGGAATTCAAAGTGCCTCATCAGA CAAGCTTGATCATCACCAACGATGGAGTGGGCGTAAATCTCCAACAAAGTGCAGGTTCGCTTCTCCTCCTTAACTTAACCGATATTTTCCAGTTTATGTG CCCTGTGGCTTCTCGTTTCGGGTGGTGTACTCACTGA
AA sequence Show only first row Show all	>Lus10028079 pacid=23181119 polypeptide=Lus10028079 locus=Lus10028079.g ID=Lus10028079.BGIv1.0 annot-version=v1.0 MVVNPINGRGNCSVTGCGGDLRPLCQSELSVKGGRGKVVGCRSACDVFDTDEYCCRGVYGNPVVCQPTYYSKKFKDACPTAYSYAYDYPTSIFTCSGTDY VVTFCSSKFSVPEAAPFTAVMRFIAKEFKVPHQTSLIITNDGVGVNLQQSAGSLLLLNLTDIFQFMCPVASRFGWCTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	0	1
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10001152 [exp]	1.0	0.7386
AT3G49550			unknown protein		Lus10000077 [exp]	7.2	0.6383
AT4G20190			unknown protein		Lus10036246 [exp]	11.2	0.6398
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	12.3	0.7291
AT2G02148			unknown protein		Lus10031926 [exp]	13.3	0.6755
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	19.2	0.7142
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	23.5	0.6399
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009018 [exp]	24.0	0.6506
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	25.0	0.6755
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10015868 [exp]	27.5	0.6848

Compare expression of checked genes

Lus10028079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.