Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G38065 606 / 0 O-fucosyltransferase family protein (.1) AT1G38131 605 / 0 O-fucosyltransferase family protein (.1) AT1G35510 489 / 3e-170 O-fucosyltransferase family protein (.1) AT1G14970 452 / 2e-155 O-fucosyltransferase family protein (.1) AT2G01480 447 / 1e-153 O-fucosyltransferase family protein (.1) AT5G65470 289 / 8e-93 O-fucosyltransferase family protein (.1) AT3G26370 287 / 2e-91 O-fucosyltransferase family protein (.1) AT1G29200 281 / 5e-90 O-fucosyltransferase family protein (.1.2.3) AT4G38390 282 / 1e-89 RHS17 root hair specific 17 (.1) AT4G24530 280 / 3e-89 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025631 [exp] 827 / 0 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 472 / 1e-162 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 458 / 5e-158 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 454 / 1e-156 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 446 / 5e-153 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 434 / 8e-149 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 425 / 7e-145 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 288 / 3e-92 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 287 / 6e-92 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087300 [exp] 619 / 0 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 607 / 0 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 490 / 4e-170 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 475 / 1e-164 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 467 / 2e-161 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 298 / 3e-96 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 296 / 2e-95 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 291 / 5e-93 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 288 / 5e-92 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 287 / 9e-92 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028080 pacid=23181212 polypeptide=Lus10028080 locus=Lus10028080.g ID=Lus10028080.BGIv1.0 annot-version=v1.0 ATGTATTTTAGCTGGATTGCAGAGTCCTCAGGCCCAAGCGGCTACTTGCTTATTAATGCCAATGGCGGCCTCAATCAGCAGCGTTCTGCGATATGCAATG CAGTTGCTGTAGCTGGACTTCTAAATGCAGTATTAGTCATTCCGAAATTTGATTTCAACCGTGTTTGGAAAGATTCAAGCGAGTTTGAGGACATATATGA TCAGGATCATTTCATAGCCACACTTGAGAAACACGTGAAAGTGGTGAAACAATTACCAGATGAAGTGATGAGAAAATATGGCTACAACATGACCAATATC CAATCAATTAGAGTCCCTCCTTGGGCTCCTGCAAATTATTACTTGGGACAAATCTATCCCGTCTTAAGAGAGCATGGGGTTCTCCGTTTTTCACCGTTCG CGAATAGATTGGCAATGAGTGTCCCACCGAATATTCAGTTGCTAAGATGCTTAACAAATTACAAAGCCTTGAGGTATGCTCCACCTGTATCGTCATTAGC AGAGAAGCTAGTAAACCGAATGATTGAGAAGAGCTCGATAAATGGAGGGAAATATGTTTCCATCCACCTGCGATTTGAGCAGGACATGGTGGCATTTTCA TGCTGCATTTATGATGGTGGAGCTACTGAAAGGAATGAAATGGCATCATATCGGGAGTCAGAGTGGAAGGAGAAGTTTAAAAGAACAGATCGTGATGTTA ATCCTGGTCTAAACCGAATTGAAGGAAAATGCCCTTTGACCCCACTAGAGGTTGGAATGATTCTGCGTGGTATGGGATTTGATAACACCACCTCAATATA CATAGCATCTGGCAAGATTTACCAAGCAGAAAGACATTTAAAACCATTGTTGAAGATGTTTCCCCTTCTCTATTTCAAGGAGTCTCTTGCAACACCAGAG GAACTTGCACCATTTGAGGGCCATTCTTCAAGGTTAGCAGCTCTGGACTACACTGTGTCGTTGTATAGCGAGGTTTTCATGACAACACAAGGTGGAAACT TCCCTCATTTCTTAATGGGACATAGAAGATTTCTCAATGGACATGCCAAGACGATCAAGCCCGATAAGCGCAAGCTCGTGGTTTTACTACAAGACAAGAC AATCAGTTGGAAGGCCTTCAAGGATCAGATGCAAGAAGTGCTAGCCGAAAGCGACCGCAAAGGACTGATGGTTCCCAGAGTCAAAAAAATCAACAGAAAA ACCTCCATCTATCAGTACCCATTGCCGGAATGTAGTTGCCTCCAGCCACCCCAGAACTCGTCTCTCAGATTAAACCACCACGACGATAACGACCATTTAG ACTCACTTTGA
AA sequence Show only first row Show all	>Lus10028080 pacid=23181212 polypeptide=Lus10028080 locus=Lus10028080.g ID=Lus10028080.BGIv1.0 annot-version=v1.0 MYFSWIAESSGPSGYLLINANGGLNQQRSAICNAVAVAGLLNAVLVIPKFDFNRVWKDSSEFEDIYDQDHFIATLEKHVKVVKQLPDEVMRKYGYNMTNI QSIRVPPWAPANYYLGQIYPVLREHGVLRFSPFANRLAMSVPPNIQLLRCLTNYKALRYAPPVSSLAEKLVNRMIEKSSINGGKYVSIHLRFEQDMVAFS CCIYDGGATERNEMASYRESEWKEKFKRTDRDVNPGLNRIEGKCPLTPLEVGMILRGMGFDNTTSIYIASGKIYQAERHLKPLLKMFPLLYFKESLATPE ELAPFEGHSSRLAALDYTVSLYSEVFMTTQGGNFPHFLMGHRRFLNGHAKTIKPDKRKLVVLLQDKTISWKAFKDQMQEVLAESDRKGLMVPRVKKINRK TSIYQYPLPECSCLQPPQNSSLRLNHHDDNDHLDSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	0	1
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	1.0	0.9321
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	1.4	0.9084
AT2G02910			Protein of unknown function (D...		Lus10036741 [exp]	3.0	0.8815
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	4.1	0.8447
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	5.7	0.8680
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	6.0	0.8700
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	6.0	0.8656
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	8.7	0.8262
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	9.4	0.8791
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10030155 [exp]	10.0	0.8626

Compare expression of checked genes

Lus10028080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.