Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08210 778 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 382 / 4e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 384 / 5e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 371 / 6e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 373 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 365 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 372 / 9e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 366 / 5e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 360 / 4e-113 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 355 / 1e-110 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 397 / 7e-126 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 385 / 3e-121 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 379 / 9e-120 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 370 / 2e-117 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10021232 [exp] 368 / 3e-117 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 365 / 1e-115 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 362 / 4e-114 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 367 / 1e-113 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 361 / 2e-112 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087400 [exp] 889 / 0 AT4G08210 889 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G047800 [exp] 410 / 7e-131 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 388 / 2e-123 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 380 / 2e-118 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 374 / 8e-118 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 366 / 8e-117 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 368 / 2e-116 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 368 / 1e-114 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 358 / 7e-114 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 360 / 2e-113 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028082 pacid=23181226 polypeptide=Lus10028082 locus=Lus10028082.g ID=Lus10028082.BGIv1.0 annot-version=v1.0 ATGGAGTTGAAGTACATAGTGGCAGCTTTGCGCCATTGCCGAAAGCTTCACAGTCCAAAACACGGAAAATCATTCCATTCCCACCTCATCAAGACCGGGT TCTTCCCTTCCGACGTATACATGATGAACAACCTAATCTCAATGTACACGGATTGCTCCCTCGTGACCGACGCCCGCAACCTGTTCGACGAAATGCCCGT GAGAAATATCGTCACCTGGACATCAATGGTCCACGCCTTTACCACAACCGGTAACCCTCACGACGCCATAAATCTCTACCACCAGATGCTGAACGATGAA ATGGAGACTATTACTCCGACCGGGTTTATGTACTCCGCCGTGTTGAAAGCTTGTGGAATGGTGGCCGATGTCGAGCTTGGTAAGACGATACATGACAAGA TCATCGAACAGAATTTGGAAGACGACGTCGTTCTGATGAACACTGTGTTGCACATGTACGTGAAATGCGACAGATTGCTCGATGCGAGGGGTGTTTTTGA TTCGATGATGTCTCGAGCGAGTACCACTTCTTGGAACACGATCATCTCCGGGTATTGCAGGCAGGGTTTGATGAAGGAAGCGGTTGATTTGTTTCGTAAA ATGCCTGAACCGAATGCTGTGTCGTGGAATAGCATCATAGCTGGTTTGGCAGACAATGGTGGGAATTTCAGGACATTAGAGTTCTTGTGTAGGATGCACC GTGAAAGTTTCAAGCTTGACGAGTTCACTTTCCCATGTGCTCTAAAAATTTGTGTTGAGTTTGAGTATTTAGCCATGGGGAAGCAAATTCATAGTTATGC TTTGAAGTCTGGATTTGAGAGTTGTAGCTATACTTTATCTGCGTTGCTCGATATGTATTCGAATTCGAAATCTTTGGATGAAGCGGTTAGACTGTTCGAA ATGCGGAACGAACCGCCTAGTTTGGTGTTGTGGAATTCTATGGTTTCGGGGTATATCGGGAATGGAAAGGATGTGAAAGCTCTTAACTTGCTGAGTTACA TCCATAGCTCTGGTTATTTTCTTGATTCCTACACTTGGAGTAGTGCATTGAAGGTCTGCATTAACCTGCGTAATTCTAGGCTCGGAGTTCAAGTGCATGG TCTCGTTGTTATAACTGGTTACGAGTTGGATTGCGTTGTCGGCAGCATCCTCGCGGATCTATACGCGAAACTGGGACGAATGGAGGACGCATTCCCAGTG TTTCGCAGGCTCCCAGTGAAAGACAATGTAGCTTGGTCGGGTTTGATCTCAGGATGTGCCAAAGCAGGGTTAAACGCGGCTGCTTTCTCGCTGTTTCGAG ATATGGTCAGTTTTGAACATGAAGTTGATCAGTTTGTTATTGCTAGCATGCTGAAAGTTTGTTCAAGTGTATCGTCACTTGGAAGAGGGAAACAAATTCA CTCTTTATGCATCAAAGGAGGGTATGAAACAGAAGCAGTGGCAGCCACTGCTCTTATTGATATGTATTCGAAATGTGGAAAGATTGAAGAGAGTATCGCG CTATTTAATCTTTTAGTTGATAGAGATGTCACGTGTTGGACAAGTATCATAGTCGGGTGTGGACAGAATGGTAGAGTAAATGAAGCTCTTGAGATATTCC AAGAGATGATACTTCGATCAGAGGTCGAACCGAACGAGGTTACATTTTTAGGGGTTCTTGCTGCATGTAGGCATGCAGGTCTGGTCGAAAAAGCGTGGTC GCTGTTCGAGTCGATGAGGTCGAATCACGGGCTTGAACCTCAGGTAGAGCATTATTTTTGCATGATAGATTTGCTTGGTCAAGCTGGGCTTATAAAGGAG GCAGTCAATTTGGTTTCTGAGATGCCATTTAGGCCTAACAAAACCATATGGAGTTCCTTGCTTGCCGCTTGCGTTACTCATAAGAACAGCGAAATGACAG GTGGCATAGCTGAAAAACTCCGTGATTCGTTCCCCGAGGATCCATCTGTATACGTTATGATCTCGAATTCTTACGCGTCGCTGGGAATGTGGGATGATCT AAGCAGAGTAAGGGAGGCTGCTAAAACTTCCGGCATAAAAGAATCTGGGAGGAGTTGGATTGAGGTATCTGCTTAG
AA sequence Show only first row Show all	>Lus10028082 pacid=23181226 polypeptide=Lus10028082 locus=Lus10028082.g ID=Lus10028082.BGIv1.0 annot-version=v1.0 MELKYIVAALRHCRKLHSPKHGKSFHSHLIKTGFFPSDVYMMNNLISMYTDCSLVTDARNLFDEMPVRNIVTWTSMVHAFTTTGNPHDAINLYHQMLNDE METITPTGFMYSAVLKACGMVADVELGKTIHDKIIEQNLEDDVVLMNTVLHMYVKCDRLLDARGVFDSMMSRASTTSWNTIISGYCRQGLMKEAVDLFRK MPEPNAVSWNSIIAGLADNGGNFRTLEFLCRMHRESFKLDEFTFPCALKICVEFEYLAMGKQIHSYALKSGFESCSYTLSALLDMYSNSKSLDEAVRLFE MRNEPPSLVLWNSMVSGYIGNGKDVKALNLLSYIHSSGYFLDSYTWSSALKVCINLRNSRLGVQVHGLVVITGYELDCVVGSILADLYAKLGRMEDAFPV FRRLPVKDNVAWSGLISGCAKAGLNAAAFSLFRDMVSFEHEVDQFVIASMLKVCSSVSSLGRGKQIHSLCIKGGYETEAVAATALIDMYSKCGKIEESIA LFNLLVDRDVTCWTSIIVGCGQNGRVNEALEIFQEMILRSEVEPNEVTFLGVLAACRHAGLVEKAWSLFESMRSNHGLEPQVEHYFCMIDLLGQAGLIKE AVNLVSEMPFRPNKTIWSSLLAACVTHKNSEMTGGIAEKLRDSFPEDPSVYVMISNSYASLGMWDDLSRVREAAKTSGIKESGRSWIEVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08210			Pentatricopeptide repeat (PPR-...		Lus10028082 [exp]	0	1
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	1.0	0.8525
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	5.3	0.7786
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	5.7	0.7598
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	6.3	0.7871
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	6.7	0.7621
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10025277 [exp]	8.5	0.7788
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004518 [exp]	10.5	0.7206
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	10.9	0.8195
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	12.0	0.8003
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10029884 [exp]	13.3	0.6772

Compare expression of checked genes

Lus10028082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.