Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75710 233 / 2e-71 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G27240 174 / 1e-49 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 172 / 2e-48 C2H2ZnF zinc finger protein-related (.1) AT2G29660 127 / 1e-32 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 98 / 2e-22 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 92 / 1e-20 unknown protein AT4G12450 83 / 1e-17 unknown protein AT4G22560 81 / 3e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025632 [exp] 491 / 8e-173 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 239 / 3e-76 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 237 / 2e-73 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 235 / 1e-72 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 168 / 3e-47 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018388 [exp] 133 / 2e-34 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10040685 [exp] 129 / 3e-33 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10018219 [exp] 127 / 2e-32 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10007625 [exp] 122 / 1e-29 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173400 [exp] 299 / 2e-97 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 291 / 1e-94 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 246 / 3e-77 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 239 / 2e-74 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 167 / 1e-46 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 163 / 2e-45 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.001G249900 [exp] 147 / 4e-40 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 147 / 4e-40 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.004G030800 [exp] 134 / 6e-35 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.001G121600 [exp] 89 / 8e-20 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028083 pacid=23181124 polypeptide=Lus10028083 locus=Lus10028083.g ID=Lus10028083.BGIv1.0 annot-version=v1.0 ATGGCTATCTGGAAAACCCCAAAAAAAACCACCACAGAGACCCACCAAAACAAGAACAAGAACAAGAGACAGAGCAGCCAACAGCAACAAATCCAAAAAC CAGAGAATAAACCACCTTCTTCTTCTTCTTCTTCATGGAAAGGAATCTTCAGCTGCAAAGATCTCCAAACCCATAACCAGATTCTTAACCAGCTGGACGA ACCACCGGTCACACCTACCAGCAAGAAGAGCAAGAAACTCAAATGCTCTGGCTCTCTCTGTAGCAACACTAAGGTAATGCAGTACCGTCCAGCAGAATTA ATTGGTTCTAGTACCAGTACTACCAATACAAGTGGTACTAGTACAATAATGCTCGGTTCGAGTAGTAGATCGATGAGGCCACCGGTTTCGAGTGATGTGG CAGTTAGCAGCAATGGAGGGAGAAGGGGTGTTGTTTCGGGTTCGAGTTATTCGACGTTCAAGGGGATGCCTTTCAGTAGATTCTCAGGGTGCTATGAGTG TAGGATGGTGGTTGATCCTGTTCTTGGCGGGTTAGGTGGTAAAGATTCTTCTGGTTTGAGAAATAGTATCTGTGCTTGTCCTGACTGTGGGCAGATCTTC ATGAAAGCTGAGAGCTTGGAGCTTCATCAGGCTGTTAAACATGCTGTGTCAGAGCTAGGCCCAGAGGACACAAGCAAGAACATAGTGGAGATCATATTCC AATCAAGCTGGCTGAAAATGGAATCACCAATCTGCAAGATAGACAGGATCCTCAAAGTCCACAACACTCAGACCACCATCGCGAAATTCGAGGAGTACCG AGACTCCATCAAGTCCAAAGCCACTAACTTGTTCCCCAAGAAACACCCCCGATGCATTGCTGACGGCAATGAGCTCCTCCGCTTCCACTCCACCACCTTC GTCTGCTCCCTCGGCCTCAACGGCTCCTCCAACCTCTGTTCCGGACGCTGCAACGTCTGTAGCATCATCAAGAACGGGTTCACGACTGGTACTGGAGGTA CTATTGGGATTTTGACGACTGCTACCAGTGGGAAGGCGCATGACAATGCGATAGGGACGACAGTGGTAGGGGTCGAAAAGGCGGAGAAGAGGGCGATGCT GGTGTGTAGAGTGATAGCAGGGAGAGTGATGAAGAAGAATGCATCGACGTTGGGTACTATTAAGAATTCTCAGGTACAGCGAGATGATGAAGAGGGAGAA GTTGGGAGAGGGGAGGGGAGAAAAGAGTATGATTCAGTGGCTGGTGGGGATGTTGGGGTTTATTCTAATTTGGATGAGCTTTATGTGTTTAACCCTATGG CTATTTTGCCTTGTTTTGTTGTTATTTACTGTGGCTTTTAG
AA sequence Show only first row Show all	>Lus10028083 pacid=23181124 polypeptide=Lus10028083 locus=Lus10028083.g ID=Lus10028083.BGIv1.0 annot-version=v1.0 MAIWKTPKKTTTETHQNKNKNKRQSSQQQQIQKPENKPPSSSSSSWKGIFSCKDLQTHNQILNQLDEPPVTPTSKKSKKLKCSGSLCSNTKVMQYRPAEL IGSSTSTTNTSGTSTIMLGSSSRSMRPPVSSDVAVSSNGGRRGVVSGSSYSTFKGMPFSRFSGCYECRMVVDPVLGGLGGKDSSGLRNSICACPDCGQIF MKAESLELHQAVKHAVSELGPEDTSKNIVEIIFQSSWLKMESPICKIDRILKVHNTQTTIAKFEEYRDSIKSKATNLFPKKHPRCIADGNELLRFHSTTF VCSLGLNGSSNLCSGRCNVCSIIKNGFTTGTGGTIGILTTATSGKAHDNAIGTTVVGVEKAEKRAMLVCRVIAGRVMKKNASTLGTIKNSQVQRDDEEGE VGRGEGRKEYDSVAGGDVGVYSNLDELYVFNPMAILPCFVVIYCGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028083 [exp]	0	1
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	12.4	0.8052
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	16.2	0.8231
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	28.4	0.7944
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10018633 [exp]	32.0	0.7476
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	51.2	0.7881
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	57.0	0.7730
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10014332 [exp]	58.4	0.7837
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	76.5	0.7083
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	81.8	0.7046
					Lus10022643 [exp]	97.0	0.7524

Compare expression of checked genes

Lus10028083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.