Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77720 737 / 0 PPK1 putative protein kinase 1 (.1) AT4G08470 109 / 1e-24 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08500 97 / 2e-20 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G29810 89 / 2e-18 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT2G32510 88 / 3e-18 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT4G08480 89 / 7e-18 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT1G73500 86 / 8e-18 ATMKK9 MAP kinase kinase 9 (.1) AT3G21220 86 / 9e-18 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT4G26890 87 / 1e-17 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G50240 88 / 2e-17 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025634 [exp] 1425 / 0 AT1G77720 650 / 0.0 putative protein kinase 1 (.1) Lus10003745 [exp] 92 / 3e-20 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10028038 [exp] 94 / 2e-19 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10042698 [exp] 92 / 6e-19 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10029657 [exp] 90 / 2e-18 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10042750 [exp] 87 / 2e-18 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10001081 [exp] 84 / 5e-18 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10002096 [exp] 88 / 2e-17 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10035764 [exp] 85 / 2e-17 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G087600 [exp] 925 / 0 AT1G77720 801 / 0.0 putative protein kinase 1 (.1) Potri.005G173300 [exp] 876 / 0 AT1G77720 832 / 0.0 putative protein kinase 1 (.1) Potri.005G172200 [exp] 93 / 2e-19 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.007G106800 [exp] 93 / 3e-19 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.008G009800 [exp] 89 / 1e-18 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 87 / 3e-18 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 87 / 3e-18 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.005G062500 [exp] 89 / 6e-18 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.018G050800 [exp] 86 / 8e-18 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.014G155000 [exp] 86 / 9e-18 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028085 pacid=23181249 polypeptide=Lus10028085 locus=Lus10028085.g ID=Lus10028085.BGIv1.0 annot-version=v1.0 ATGGAGCCGGAGGCTAACCTTCCGGTGGTACCAGCCGCCGCAGCTCATCCGACCAATAAGAATCTAGTCAGAAGCGCAATTTCCAATCTGGACACCACTA CCTCTTCTTCTTCGTCGTCTTTCTCATCATCCTCCTCGCCGGAGTTTCTCCGGCATGTTCAAGCTGCTTTCAAGCGCCACCGTCCCCTTGGTATAATGCA GGGAGATGGTTTGAAGCCCAGGCGCATGTTGGGTCCTCAAAGACAAGCAGTTAGGAATTTAGCTTCCCATATGATTCCCAGCAATGCCAAGTCTGATGAT GTTGCTTCACGGAGTCAATCAGCAATGAACACAAATGTTCAAGTTAAGAACCCAGATGTTACAGTTTTACATAAAGACGCATCAATTACACCTCCCGTTT CAGAAACGATAACAAAGCAGCCTCTAGAGAATTTCGATTCGCTTGAAATACAGAAGGAACGGCCGAAGCGTGCTGTTGCTTTTAAGGATGTGAGGACCCT GTTAAGGTCTGATGTGGAACCGAAACATGATAATATGACAAGAAGCGATCAATTCGGTGTAACAAAGACTTCGGCCACCCAAGGGGCCAATGATCAAGTG CCCAATACATTGGAGAACTTATCTTCTCATTTGAATTCACTTGCATTGACAGAAATGGAATGGGAGGTGGGTAGTCAAGTTGAAGTGTCAAATGTTGTCC ATGATGAAGCAAAGCACCAGAAATTTCAGAACCTGGACAGTGATACTGGTGGCAAGTCTGATGCTGCCGTAGCTTTGTTGGCAAACCGAGCAACTGTTGT CAAGGATCAATCACATGAATTGAGAAGTTTTTTAAATCAACCAGCTACTCGATTTTCAGTTGCAGGTACAACGTGTGCCACCCCAACATCTGTTCATTCT TCTTTAGCACCATTGATAAACTCCACAACGTACAGTTCACAGACTCTTATAGATCGTGGTTCTCATGTGGCAGTTGAGCCAATGGGAGGTAGTGATATGA GTGCAGCACAAGGGCATTTGCAGCAGTCATCAAATTCCTTGGCGAAGGGCATGAGTAAGGTGTTAAGTGATAAGTCAGCCATTTCTATCCAAGCTTCTAG CAGTGCCATAGATGTAAAAGTTATGGAGCATCAACGGCTTCAGGATACACAAAAGGCCACAAAGGAAAGCGGGATTCCCGATAATCCTCTTCATGACGAT AAAAAGGTGAATAATGAGGGACAATTAGTTGAGTCTGTTGCTAATGTACAGTTGGATAGAACAGCAAAGCAAGAAAAGGCTACTGGTGGTAAGGGCACAT CAAGTCAACGAAAGAGAGCTTACGACCCTGACTTATTCTTCAAAGTGAACGGAAAGCTTTATCAGAGACTTGGGAAGATTGGTAGTGGTGGAAGCAGTGA GGTTTACAAGGTGATTTCGTCTGATTGTACAATTTACGCACTCAAGAAAATCAAACTGAGAGGACGTGATTATGCCACAGCATATGGATTTTGTCAGGAA ATTGAATATCTCAACAGATTGAAGAGGAAGAACAACATAATACAGCTGATAGACTATGAGGTGACAGATAAGAATTTGCTCCAGGAAGTAATCAATGGCT CCATCAGTAACAAAGACAGCAAAGTCAAGGATGATGCGTGTATATATATGGTTCTTGAGTATGGGGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTG GAAGGAAATGGATGGTTCGAATCAGACGCTTGATGATAACTGGCTTCGATTTTACTGGCAGAAACTAAGGGAGTTTCTTACCTTAGTTGCAGTAGTCAGC CTTTCTTCTCCTCATCGACTAAGATTTCACGGTTCTTTCTTAACTGCCGTGCAGCAAATACTTTTTGCTGTTAACACCATTCACGAGGAGCGCATAGTAC ACTCAGACCTGAAGCCAGCCAATTTCCTTCTCGTTAAAGGTTCTCTAAAGCTTATCGATTTTGGCATTGCCAAAGCTATAATGAGTGACACGACCAACAT CCAGAGGGACTCACAGGTAGGCACCCTAAGCTACATGTCCCCCGAAGCATTCATGTGCAACGAGCAAGACGCCAACGGTAACATCATAAAGTGTGGCCGG CCATCAGACATTTGGTCCCTCGGCTGCATACTATATCAAATGGTCTACGGCAGGACACCCTTTGCGGACTACAAAACATTCTGGGCGAAATTCAAAGTCA TAACCGACCCAAACCACGAAATAACCTACGAACCTGTGTCGAACCCCTGGCTCCTCGACCTCATAAAGAAGTGTCTAGCCTGGGACCGCAACGAACGGTG GAGGATCCCTCAACTCCTCCACCACCCTTTTCTCGTCCCTCCCGTCGCCCCACCTTCCGGCCACAAGCTGCTTCAGCTCGTCGCTGAAGCTGACCAAAAT GCTGCTTCCTTCTGCAGCGAACTCGAACGACTGCTGTCCGATCAGGTCAGTTCCGAAGTGTTGACTTCACGTGATCAACAACGTGAGGTAATCTCGAGAA TGTCCTTGCTTTGTCGTAAGATTGAGGAATGTGTGATGAAAGTCGATAAGGAGGAATAG
AA sequence Show only first row Show all	>Lus10028085 pacid=23181249 polypeptide=Lus10028085 locus=Lus10028085.g ID=Lus10028085.BGIv1.0 annot-version=v1.0 MEPEANLPVVPAAAAHPTNKNLVRSAISNLDTTTSSSSSSFSSSSSPEFLRHVQAAFKRHRPLGIMQGDGLKPRRMLGPQRQAVRNLASHMIPSNAKSDD VASRSQSAMNTNVQVKNPDVTVLHKDASITPPVSETITKQPLENFDSLEIQKERPKRAVAFKDVRTLLRSDVEPKHDNMTRSDQFGVTKTSATQGANDQV PNTLENLSSHLNSLALTEMEWEVGSQVEVSNVVHDEAKHQKFQNLDSDTGGKSDAAVALLANRATVVKDQSHELRSFLNQPATRFSVAGTTCATPTSVHS SLAPLINSTTYSSQTLIDRGSHVAVEPMGGSDMSAAQGHLQQSSNSLAKGMSKVLSDKSAISIQASSSAIDVKVMEHQRLQDTQKATKESGIPDNPLHDD KKVNNEGQLVESVANVQLDRTAKQEKATGGKGTSSQRKRAYDPDLFFKVNGKLYQRLGKIGSGGSSEVYKVISSDCTIYALKKIKLRGRDYATAYGFCQE IEYLNRLKRKNNIIQLIDYEVTDKNLLQEVINGSISNKDSKVKDDACIYMVLEYGEIDLAHMLSQKWKEMDGSNQTLDDNWLRFYWQKLREFLTLVAVVS LSSPHRLRFHGSFLTAVQQILFAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNEQDANGNIIKCGR PSDIWSLGCILYQMVYGRTPFADYKTFWAKFKVITDPNHEITYEPVSNPWLLDLIKKCLAWDRNERWRIPQLLHHPFLVPPVAPPSGHKLLQLVAEADQN AASFCSELERLLSDQVSSEVLTSRDQQREVISRMSLLCRKIEECVMKVDKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	0	1
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	1.4	0.9726
					Lus10037590 [exp]	2.2	0.9782
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	3.2	0.9608
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	3.5	0.9642
AT1G65710			unknown protein		Lus10010952 [exp]	4.6	0.9668
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	4.9	0.9665
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	4.9	0.9614
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	5.3	0.9639
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040140 [exp]	6.1	0.9379
AT1G16630			unknown protein		Lus10006845 [exp]	7.1	0.9660

Compare expression of checked genes

Lus10028085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.