Plant FIBer expression Database

Lus10028086 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000427
[exp]
112 / 4e-28 AT1G07270 150 / 1e-39 Cell division control, Cdc6 (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10028086 pacid=23181152 polypeptide=Lus10028086 locus=Lus10028086.g ID=Lus10028086.BGIv1.0 annot-version=v1.0
ATGTTTTTCAGGTTAAAATTGCTCCAAAAGGGGAAAAAGCACAGGCATTCCGGGAAGAAAACGGTAGAGCATACAGAAGGCGATTCAAGTAGTACATTGT
GTCCTGCAAATATGGAGCCATCGTATTTGTCTTGGAGCAACTTTGTAAAGGATCACGGGTCTTCTTTATTGAGGAGAGTAGGCTCTTCAGATTCCTTGTC
TACGAGTGGCAGGATATTGTTTCAGTGTTTGTTTCGAGAGTTAGAGGAACGCTTTTGGGATGGGGATGGAAAACCATCAGTTGGTATGCTGAAAGGTCCA
AATATGGTTGTTAAATTTCATCAAGGTGGTGAAGATTACTGGATTGAATCAGTGACTATAAGAGAGATTACTCACGTTCGAGTTTATGTTGAAGAAGGAA
ATTTCAAAGGACATGAATTAGACAGTCGACCAAAAGATGTAGCTTGGGTGAATGAGCTAATGGTATTGGGTGATAGACTCACTGAACTGTTTGCGCATGG
CTCGAAGGTTGACCAATATTTGACCCACATCCAACAATTATCAAATGGTAATGGCCTAGGAGAAGATCTCTGTGCTAACTGGAGTTGGAGGTGGCAAATG
GTGCTCGACCACCCATGCACTTGGGAACCATACCGGTCGTTCCATTTCATCACGAGGTTATATTCATTTTATGAAAGCCCAATTGACAACTCGGACGACG
TAATGCATCTTATTGAGAATCTTCCCATTGATGATGATAATATGAACAATGAAGAGATCTCAACTTATCTGACAACCTTCTTTGAGGATAGGGAAACAGT
GAAGATAGCTATCAAGGCTTAA
AA sequence
>Lus10028086 pacid=23181152 polypeptide=Lus10028086 locus=Lus10028086.g ID=Lus10028086.BGIv1.0 annot-version=v1.0
MFFRLKLLQKGKKHRHSGKKTVEHTEGDSSSTLCPANMEPSYLSWSNFVKDHGSSLLRRVGSSDSLSTSGRILFQCLFRELEERFWDGDGKPSVGMLKGP
NMVVKFHQGGEDYWIESVTIREITHVRVYVEEGNFKGHELDSRPKDVAWVNELMVLGDRLTELFAHGSKVDQYLTHIQQLSNGNGLGEDLCANWSWRWQM
VLDHPCTWEPYRSFHFITRLYSFYESPIDNSDDVMHLIENLPIDDDNMNNEEISTYLTTFFEDRETVKIAIKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10028086
[exp]
0 1
AT5G28060 Ribosomal protein S24e family ... Lus10015941
[exp]
2.8 0.8638
AT4G36290 CRT1 compromised recognition of TCV... Lus10014276
[exp]
4.0 0.8578
AT2G34050 unknown protein Lus10013954
[exp]
5.0 0.8424
AT3G05700 Drought-responsive family prot... Lus10001462
[exp]
8.0 0.7875
AT3G20740 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDO... Lus10011165
[exp]
8.5 0.8328
AT4G08310 unknown protein Lus10003736
[exp]
9.0 0.8564
AT5G06210 RNA binding (RRM/RBD/RNP motif... Lus10013306
[exp]
9.5 0.8412
AT3G01410 Polynucleotidyl transferase, r... Lus10032166
[exp]
13.2 0.7276
AT1G80750 Ribosomal protein L30/L7 famil... Lus10019603
[exp]
16.1 0.8418
AT3G45900 Ribonuclease P protein subunit... Lus10033275
[exp]
17.0 0.7897

Lus10028086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.