Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08180 1074 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 1020 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 846 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G12460 766 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 705 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT4G22540 626 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT1G77730 219 / 1e-65 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 182 / 9e-50 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 172 / 2e-46 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 171 / 5e-46 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025635 [exp] 1474 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 850 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 833 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024613 [exp] 768 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10032251 [exp] 679 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025695 [exp] 667 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 587 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 176 / 8e-48 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 174 / 5e-47 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088000 [exp] 1162 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 1156 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.019G015111 [exp] 897 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 842 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 816 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 813 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.008G182766 [exp] 291 / 8e-92 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 172 / 4e-46 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 62 / 1e-09 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 60 / 4e-09 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10028087 pacid=23181244 polypeptide=Lus10028087 locus=Lus10028087.g ID=Lus10028087.BGIv1.0 annot-version=v1.0 ATGCATCATTTCTGCTGCACATCAACAGTGTCGAACAACTCCCCGACTGCTGCTGCTACTGCGAATCCCCTGATGGCAATCGCCACCAGATCCGACCTCT CTTCCCGATCGTTCACCGACCACATTCACTTCTCCGATCGTCGCCACCACGGTCGCACCGTGTCCGTCGATTCTGTTATCAGTAACGGCGGTGGAGGAGG AGGAAGGCACAGTTGTCGGATTTCTACTGTGGCGAATTCGGCCTCCGGGAGGGAGCAGCCGGTGGATGTGAAGATTAACGACATAGTAGGGAACGGGATA TCGGGGATCCTGCATAAGTGGGTGAACTACGGCAAAGGTTGGAGGCCGAGGTGGTTCGTATTGCAGGATGGAGTTGTGTCGTATTACAAGATTCATGGAC CTGATAGGATCGTTGTTAATCTGGAGACGGAGAAAGGATGTAAAGTGATTGGGGAAGAATCGATAAGAAGGATTTCCAGGGCGGATAATGGAACTACGTT GCAGCAGAGAAGGATTCCTGTTGGCGAAGTTCATCTCAAGGTGTCTTCTATTCGAGAAAGTAGATCCGATGATAAGAGATTCTCGATATTTACGGGGACT AAAAGGCTCCATTTGCGAGCTGAGACGAGGGAGGATCGATTGGCATGGATGGAGGCATTGCAGGCGGTGAAGGACTTATTCCCTAGGATTTCCAACAGCG AGTTGATGGCTCCAGTGGACAACGTGGCTGTCTCAACCGAAAAACTGAGGCAGATGCTTGAAGAAGAAGGGGTTAGGGAAGAGGTGATTCTGGAAAGCGA GCAGATCATGAGGAGTGAGTTCACAGGCCTGCAGAACCAAATAGAGCTGTTGAAGCAGAAGCATCGACAGCTCATTGAAACGCTGCGGCAGTTAGAGACG GAAAAAGTCGATCTGGAGAATACAGTTGTTGATGAGAGCCAAAGACAGTGGAATGACCAAGGGACGTCTTCTATGGCAGCTCGTGACAAGTTTAGTGATG CAAGCGGATTTGAATCTGAGGATGATAATGAAAGAGTAGATGCTGCAGAAGAGGAAACCGATGACGAGGATAACAATTTCTTCGATACCCGCGATTTTCT CTCGTCGGGTTCTTTTAAAAGTAACGGATCTGATTTCCGGACATCTTCGTTCTCTTCAGACGACGAAGGGCTACATCCTCACGAACTTGAAGATGATATT GATCCTTCAATTAGGTCCGCTGGGCTTGATTATCCATATGTTAAGAGACGTAAAAAGTTACCAGATCCAATCGAAAAGGAGAAAGGCATCAGTCTTTGGT CGATGATTAAGGATAATATTGGGAAGGACCTTACAAAAGTTTGTCTTCCTGTTTATTTCAACGAACCTATCTCTTCTCTTCAAAAGTGCTTTGAAGATTT GGAGTACTCCTATCTCATTGATAGAGCATGTGAATGGGGAAGAAAGGGTGAGAGTCTGATGAGGATTCTTAACGTTGCGGCCTTTGCTGTTTCTGGATAT GCTTCAACGGAAGGAAGAATCTGCAAGCCATTTAATCCACTACTGGGTGAAACATACGAGGCTGATTACCCAGATAAGGGAATCCGATTTTTCTCTGAGA AGGTCAGTCACCATCCCATGATTGTGGCATGCCACTGTCAGGGTACAGGATGGAAGTTTTGGGGAGATAGCAATTTAAAAAGCAAGTTTTGGGGTCGCTC TATACAGCTCGATCCTGAGGGTCTTTTGACTCTGGAGTTCGACGATGGAGAAGTCTTTCAATGGTCTAAAGTGACCACATCAATATACAACCTGATACTA GGGAAGCTATATTGTGACCATTACGGTACAATGCGCATAGAAGGAAACCGTGATTTCTCTTGTAAGCTGAAATTTAAGGAACAATCCATCATCGACCGAA ATCCTCACCAGGTGCAAGGAGTCATTCAGGATAAGAGTGGTAAAACCGTCGCAACACTGTTCGGAAAATGGGATGAGAGCATGCATTATGTTCTTGGAGG GAAGGCTAAAGGGTTCGAGTCATCAGAAGCTCGTATGCTCTGGAGAAGAAGCAACCCGCCGAAATCCCCTACGAAATATAACTTGACCCGCTTCGCCATA ACATTGAATGAGCTGACCCCTGGACTCAAGGAGAAGTTACCACCTACAGATTCAAGGCTCAGACCTGACCAGAGGTACTTGGAAAATGGCGAATTCGAGA TGGCAAACTCCGAGAAGTTGAGGCTGGAACAGCGCCAACGTCAGGCACGGAAGATGCAGGAGAGTGGGTGGAAACCACAGTGGTTTGCCAAGGATAACGG AAGCCCTTCGTACCGTTACACAGGTGGGTACTGGGAAGCCAGAGAGAAAGGAAACTGGGATTCCTGCCCTGATATATTTGGTCAAGTCCCGGCCGATCAG GTCCTCAGCTAA
AA sequence Show only first row Show all	>Lus10028087 pacid=23181244 polypeptide=Lus10028087 locus=Lus10028087.g ID=Lus10028087.BGIv1.0 annot-version=v1.0 MHHFCCTSTVSNNSPTAAATANPLMAIATRSDLSSRSFTDHIHFSDRRHHGRTVSVDSVISNGGGGGGRHSCRISTVANSASGREQPVDVKINDIVGNGI SGILHKWVNYGKGWRPRWFVLQDGVVSYYKIHGPDRIVVNLETEKGCKVIGEESIRRISRADNGTTLQQRRIPVGEVHLKVSSIRESRSDDKRFSIFTGT KRLHLRAETREDRLAWMEALQAVKDLFPRISNSELMAPVDNVAVSTEKLRQMLEEEGVREEVILESEQIMRSEFTGLQNQIELLKQKHRQLIETLRQLET EKVDLENTVVDESQRQWNDQGTSSMAARDKFSDASGFESEDDNERVDAAEEETDDEDNNFFDTRDFLSSGSFKSNGSDFRTSSFSSDDEGLHPHELEDDI DPSIRSAGLDYPYVKRRKKLPDPIEKEKGISLWSMIKDNIGKDLTKVCLPVYFNEPISSLQKCFEDLEYSYLIDRACEWGRKGESLMRILNVAAFAVSGY ASTEGRICKPFNPLLGETYEADYPDKGIRFFSEKVSHHPMIVACHCQGTGWKFWGDSNLKSKFWGRSIQLDPEGLLTLEFDDGEVFQWSKVTTSIYNLIL GKLYCDHYGTMRIEGNRDFSCKLKFKEQSIIDRNPHQVQGVIQDKSGKTVATLFGKWDESMHYVLGGKAKGFESSEARMLWRRSNPPKSPTKYNLTRFAI TLNELTPGLKEKLPPTDSRLRPDQRYLENGEFEMANSEKLRLEQRQRQARKMQESGWKPQWFAKDNGSPSYRYTGGYWEAREKGNWDSCPDIFGQVPADQ VLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	1.7	0.8750
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	2.0	0.8484
AT2G20440			Ypt/Rab-GAP domain of gyp1p su...		Lus10043064 [exp]	2.8	0.8122
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	3.5	0.8164
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	5.3	0.8286
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	7.5	0.8163
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	8.7	0.8300
AT2G32240			unknown protein		Lus10003812 [exp]	9.7	0.8219
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	10.8	0.8109
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043127 [exp]	11.3	0.7341

Compare expression of checked genes

Lus10028087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.