Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10260 434 / 7e-155 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 358 / 2e-124 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 355 / 2e-122 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 353 / 3e-122 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 350 / 1e-121 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 347 / 3e-120 STH pfkB-like carbohydrate kinase family protein (.1) AT5G51830 344 / 9e-119 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 163 / 4e-47 FLN1 fructokinase-like 1 (.1) AT1G50390 150 / 2e-45 pfkB-like carbohydrate kinase family protein (.1) AT1G69200 132 / 1e-34 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040562 [exp] 500 / 0 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 360 / 7e-125 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 358 / 1e-124 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 358 / 1e-124 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 353 / 3e-122 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 346 / 2e-119 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 332 / 1e-113 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 332 / 3e-113 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 325 / 2e-112 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063600 [exp] 456 / 4e-163 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 360 / 1e-124 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 356 / 3e-123 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 353 / 2e-122 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 350 / 3e-121 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 349 / 1e-120 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 336 / 6e-115 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 155 / 4e-43 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 145 / 6e-40 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 71 / 2e-15 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10028089 pacid=23181144 polypeptide=Lus10028089 locus=Lus10028089.g ID=Lus10028089.BGIv1.0 annot-version=v1.0 ATGTCGCTTGCGCCATCACCAAACTCGGGGGGGAAATCAGCCTTCCTCGGCAAGTTTGGAGACGACGAGTTTGGGCACATGTTGGTGGACATCCTGAAGA AGAACAACGTGAACACTGAAGGAGTATGCTTCGACAAAGAAGCTAGGACGGCACTGGCATTCGTAACGCTAAAGCACGATGGGGAAAGGGAGTTTATGTT CTACAGGAATCCAAGTGCCGACATGCTACTCAAGGAGTCTGAGCTAAACATTAACTTAATAAAGCAAGCCAAGATCTTTCACTATGGATCCATAAGCTTG ATCTCCGAGCCTTGTCGATCTACCCACATAGCTGCCATGAAGGCTGCTAAGTCCGCAGGGGTATTGCTATCTTATGACCCAAATGTGAGGCTTCCTCTTT GGCCTTCCGCAGATGCCGCTAGGGATGGGATCAAAAGCATTTGGAAGGAGGCTGATTTCATCAAGGTGAGCAATGATGAGGTGGAGTTTTTGACGAAAGG GAGTGCAGACAAGGAAGAGGTGGTGTTGTCCCTATGGCATGATAGGTTGAAGCTTCTTGTTGTCACAGATGGCCCGAAGGGCTGCAGATACTTCACCAAG AATTTCAAAGGGAAGGTGAGTGGTTGTAGTGTGAAGGTAGTGGATACAACAGGAGCAGGGGATGCATTTGTGGGCTCATTCCTGGTTTCTGTTGCTAAGG ACCCTTCTATTTTTGAGAATGAAGAGAAATTGAAGGAAGCACTGGTTTTTGCAAATGCATGTGGGGCAATTTGCACTACCCAGAAAGGAGCCATCCCTGC ACTTCCCACTACCAATGACGCCCTTGTTTTACTCAAATCCAAATAA
AA sequence Show only first row Show all	>Lus10028089 pacid=23181144 polypeptide=Lus10028089 locus=Lus10028089.g ID=Lus10028089.BGIv1.0 annot-version=v1.0 MSLAPSPNSGGKSAFLGKFGDDEFGHMLVDILKKNNVNTEGVCFDKEARTALAFVTLKHDGEREFMFYRNPSADMLLKESELNINLIKQAKIFHYGSISL ISEPCRSTHIAAMKAAKSAGVLLSYDPNVRLPLWPSADAARDGIKSIWKEADFIKVSNDEVEFLTKGSADKEEVVLSLWHDRLKLLVVTDGPKGCRYFTK NFKGKVSGCSVKVVDTTGAGDAFVGSFLVSVAKDPSIFENEEKLKEALVFANACGAICTTQKGAIPALPTTNDALVLLKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10028089 [exp]	0	1
					Lus10020448 [exp]	1.0	0.8971
					Lus10007097 [exp]	46.8	0.8279
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	231.9	0.7909
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038737 [exp]	258.5	0.7477

Compare expression of checked genes

Lus10028089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.