Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012415 [exp] 104 / 2e-26 AT2G25660 350 / 2e-106 embryo defective 2410 (.1) Lus10026843 [exp] 96 / 3e-24 ND / Lus10022121 [exp] 77 / 6e-18 ND / Lus10012088 [exp] 70 / 2e-14 ND / Lus10005727 [exp] 65 / 9e-14 ND / Lus10042417 [exp] 65 / 1e-13 ND / Lus10010056 [exp] 63 / 7e-13 ND / Lus10032968 [exp] 63 / 2e-12 ND / Lus10002802 [exp] 51 / 3e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028090 pacid=23181263 polypeptide=Lus10028090 locus=Lus10028090.g ID=Lus10028090.BGIv1.0 annot-version=v1.0 ATGATGGTGAAGGAGTATTCATATCCTCGCGCGGTTCGTGAGTTCTTCTACACACTTGACATCGGGAGATACACTTCCACCTCTCAGAGGGTGGTCTCCT TCCGCTTGGGAGGGAGGCTGTACACAGTGTTCCCACATGAGTTTGGGGTAATGCTCAGGTTCCATTCAAATGAGGAGCTGAACAATGGTAAGCTGGCTTG TCTTGCCATGGTTTCCGGACTCCCCCTCTATGATGTGCAGGGTTTTTGGTGTAGCATTATCAAAGACGCGCCTCAGTTTGTAGTTGGGGTCTTTAAGGCG CTGCGAACCCACAAGCCAATGCTTCGTCTCATCCATCTGTTTGCTCGCCACGGTATCTCGCACCGTTCGTCTTCAAGCTCTCCAAGTGCGCTCACTAACC GAGACATGAATGGAGTTCAGGACTTGCTTGTTAAGGAGATCGACACCGCAACTTCAGCTCGGGTATTTGTCCGATCTGCAGGCTGTCATGGAGCATCTTG CTATCCATCAATAGTGTTCTGA
AA sequence Show only first row Show all	>Lus10028090 pacid=23181263 polypeptide=Lus10028090 locus=Lus10028090.g ID=Lus10028090.BGIv1.0 annot-version=v1.0 MMVKEYSYPRAVREFFYTLDIGRYTSTSQRVVSFRLGGRLYTVFPHEFGVMLRFHSNEELNNGKLACLAMVSGLPLYDVQGFWCSIIKDAPQFVVGVFKA LRTHKPMLRLIHLFARHGISHRSSSSSPSALTNRDMNGVQDLLVKEIDTATSARVFVRSAGCHGASCYPSIVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028090 [exp]	0	1
AT1G11070			unknown protein		Lus10038307 [exp]	1.0	0.9294
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Lus10037677 [exp]	2.0	0.8456
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	4.9	0.8280
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	8.1	0.8422
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	8.5	0.8077
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	9.8	0.7800
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	9.8	0.8323
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	11.2	0.7931
					Lus10014515 [exp]	13.0	0.8303
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10030959 [exp]	13.1	0.8119

Compare expression of checked genes

Lus10028090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.