Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010798 [exp] 421 / 8e-147 AT5G27260 61 / 5e-10 unknown protein Lus10006034 [exp] 350 / 3e-122 AT5G27260 42 / 2e-04 unknown protein Lus10004397 [exp] 268 / 3e-89 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 260 / 6e-86 AT5G27260 74 / 1e-14 unknown protein Lus10032816 [exp] 251 / 2e-84 AT2G24960 57 / 1e-09 unknown protein Lus10022993 [exp] 202 / 4e-64 ND / Lus10043125 [exp] 126 / 2e-36 AT2G24960 51 / 2e-08 unknown protein Lus10024284 [exp] 120 / 1e-33 AT5G27260 50 / 2e-07 unknown protein Lus10026427 [exp] 115 / 3e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028091 pacid=23181146 polypeptide=Lus10028091 locus=Lus10028091.g ID=Lus10028091.BGIv1.0 annot-version=v1.0 ATGGACAGAATTCAGGCGCGAACTAGCTCAGCAAATGTGGGCTACTGGGGAGGAGGAACAAACCTTGGTGAGTTGTATGCAGGAGCTGGTCGAGAAGAAT GTTGTACCAAATGGAAATTTCAAACTATCTGGCCTCAAGGAGTTGGAGCGGATGTGCATACGAAGATTGCAAACTGCACCTTGTTGGTTGTTCCACATAT CAAGTCCAAGGTCCGATATTTCAAGGATAAGTTCACTGCGGTACTAGAACTCCAACAAGCTAGTGGATTTGGTTGGGATGATGCTTGTGGCTGTATAGTT GTAGATCTAGCCATCTTCGCTGGCTGGGTGAAGCCTTCAGATGCAGCATGCAAAATGCTGTCAAGTGCCAGCGCCTCTAATTTCGGAGATGAAGAAATCG AGAGACCTGATTCATACACCATTGGTCCTGAGTTGGACTATGATGAGGTGATGGAAGATATCATTAATCAAGGTATTGACCTGCATGCTACGAGACTAAA AGATGTTGAGGCTGAGATCATCTCCAAGCGAGGTCAGCAAAAAGGAAAAGAGAGAGCCACTTCATCTGCAAGTAAGCGAGGAAGGCAACAGGTTCAGGAT GATGAGCGTGCTCAGCTTCATGCCAATATCACCATCACCACCGAAAATATTTCAAGGATTGCTACCAACTACTGCTTTGAAACCGAACTAGCAATGAAAC GACAAGTGTTGTATGAGGAGCTTGCAAAGTTCACCACGCTAAGTTTAAGCCAGAAAACAAGGGCACTGAGGCACCTCAATCGTGATGATGGTGATGCTAT TACCTACTTTCAACTCCCAACTGACGAGGAGAGGCTGAAATTTGTTTGGACGATTCTCGAGTAA
AA sequence Show only first row Show all	>Lus10028091 pacid=23181146 polypeptide=Lus10028091 locus=Lus10028091.g ID=Lus10028091.BGIv1.0 annot-version=v1.0 MDRIQARTSSANVGYWGGGTNLGELYAGAGREECCTKWKFQTIWPQGVGADVHTKIANCTLLVVPHIKSKVRYFKDKFTAVLELQQASGFGWDDACGCIV VDLAIFAGWVKPSDAACKMLSSASASNFGDEEIERPDSYTIGPELDYDEVMEDIINQGIDLHATRLKDVEAEIISKRGQQKGKERATSSASKRGRQQVQD DERAQLHANITITTENISRIATNYCFETELAMKRQVLYEELAKFTTLSLSQKTRALRHLNRDDGDAITYFQLPTDEERLKFVWTILE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028091 [exp]	0	1
					Lus10022109 [exp]	1.4	0.8798
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	2.8	0.8114
					Lus10039427 [exp]	4.0	0.7441
					Lus10041330 [exp]	6.3	0.6764
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	9.2	0.7746
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	11.0	0.6710
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	19.2	0.7228
					Lus10033844 [exp]	20.3	0.6732
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	23.5	0.6825
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	24.1	0.6731

Compare expression of checked genes

Lus10028091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.