Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24710 894 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040563 [exp] 938 / 0 AT5G24710 1338 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10028093 [exp] 533 / 2e-173 AT5G24710 758 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040564 [exp] 154 / 6e-39 AT5G24710 671 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081800 [exp] 922 / 0 AT5G24710 1890 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10028092 pacid=23181116 polypeptide=Lus10028092 locus=Lus10028092.g ID=Lus10028092.BGIv1.0 annot-version=v1.0 ATGTTACGGCTTAAAGCATTCAGGCCGAGCAACGACAAGATCTTAAAAATTCAATTGCATCCTACGCATCCCTGGCTTGTAACCGCCGATGCATCCGATC GCGTCTCCGTTTGGAATTGGGAGCATCGCCAGATTATTTATGAGCTGAAAGCGGGTGGTGTTGACGAGAGGCGGTTGGTCGGAGCCAAGTTGGAGAAGCT TGCCGAGGGTGAATCCGAACCTAGAGGGAAACCTACTGAAGCCATGAAAGGAGGCAGTGTTAAGCAGGTCAACTTTTATGATGATGATGTACGATTTTGG CAACTATGGAGCAACCGCGCTGCAGCTGCGGAGGCTCCCTCTGCTGTCAACAATGTTACTTCTGCCTTCACTTCTCCTGCTCCGTCAACCAAAGGGAGGC ATTTTCTTGTGATTTGTTGTGAAAATAAAGCAATCTTTTTGGACTTGGTGACTATGCGTGGTCGTGATGTACCCAAACAAGAACTTGACAATAGATCACT TCTCTGTATGGAGTTTCTCTGTAGATCTACTGCTGGTGATGGTCCTCTCGTAGCATTTGGCGGATCAGATGGTGTCATTAGAGTTCTTTCGATGATCTCA TGGAAGCTTGTACGCCGATACACCGGGGGTCATAAAGGGGCCATAGCTTGCTTAATGACCTTCATGGCTTCCTCTGGTGAGGCACTACTTGTTTCGGGTG GTAGTGATGGTCTACTTGTACTTTGGAGCGCAGACCATGTTCATGATTCAAGAGAGCTTGTACCCAAATTAAGCTTAAAGGCACATGATGGTGGGGTTGT AGCTGTTGAGCTTTCTAGAGTACTTGGAGGTGCTCCACAACTTATAACAATTGGTGTAGATAAGACATTAGCTATATGGGATACAATGTCTTTTAAGGAG TTGCGGCGAATCAAACCAGTTCCAAAAATGTCTTGTAACAGTGTTGCATCTTGGTGCCATCCTCGAGCTCCAAACTTGGACATTTTAACTTGTGTCAAGG ATTCTCATATATGGGCCATTGAACATCCTACTTATTCAGCACTCACTAGGCCATTATGTGAGCTGTCTTCCCTCATCCCGCCCCAATATATTGTCCCCAG CAAGAAACTCAGGGTTTATTGCATGGTTGCACATCCTCTGCAGCCTCACCTTGTTGCTACTGGAACCACAGTTGGTGTTATTATCAGTGAGTTCGATCCT AAATCTCTTCCAGCTGTGGCTCCCCTGCCCACACCACCAGGAAATCGTGAGCATTCCGCTGTCTATGTCATTGAAAGGGAATTGAAATTGTTGAACTTTC AACTATCCAACACGGCAAATCCATCTCTTGGAAGTAATGGCTCTTTATCTGAAGCTGGAAAGTACAAGGGCGATGCTGCTGAACAGTTGCATGTCAAACA GATAAAAAAGCACATTAGTACTCCAGTGCCACACGATTCATATTCAGTAGTTTCAGTCAGCAGTTCGGGAAAGCCACTTGTGCTGTTGAAGAAAGATACA ATGTCCTCTGCACATGATGGTGGGGTTGTAGCTGTTGAGCTTTCTAGAGTACTTGGAGGTGCTCCACAACTTATAACAATTGGTGTAGATAAGACATTAG CTATATGGGATACAATGTCTTTTAAGGAGTTGCGGCGAATCAAACCAGTTCCAAAAATGTCTTGTAACAGTGTTGCATCTTGGTGCCATCCTCGAGCTCC AAACTTGGACATTTTAACTTGTGTCAAGGATTCTCATATATGGGCCATTGAACATCCTACTTATTCAGCACTCACTAGGCCATTATGTGAGCTGTCTTCC CTCATCCCGCCCCAATATATTGTCCCCAGCAAGAAACTCAGGGTTTATTGCATGGTTGCACATCCTCTGCAGCCTCACCTTGTTGCTACTGGAACCACAG TTGGTGTTATTATCAGTGAGTTCGATCCTAAATCTCTTCCCGCTGTTGCTGCCCTGCCTACACCACCAGGAAATCGTGAGCATTCCGCTGTTTATGTCAT TGAAAGGGAACTGAAATTGTTGAACTTTCAACTATCCAACACGGCAAATCCATCTCTTGGAAGTAATGGCTCTTTATCTGAAGCTGGAAAGTACAAGGGC GATGCTGCTGAACAGTTGCATGTCAAACAGATAAAAAAGCACATTAGTACTCCAGTGCCACACGATTCATATTCAGTAGTTTCAGTCAGCAGTTCGGGAA AGTATCTTGCGGTTGTATGGCCAGACATTCCCTACTTCTCTGTATACAAAGTCAGTGACTGGTCCATTGTAGATTCAGGAACTGCAAGGCTTCTAGTTTG GGATACATGCCGTGATAGATTCGGTATATTGGAAGCTGCTGCTCCTCCTAGGATTCCTATAATTCCGAAAGGAGGTTCATCCAGGAAGGCAAAGGAAGCA GCTGCGGCCCAAGCAGCCGCTGCAGCTGCTACTGCTGCTTCTGCTGCTACTGTGCAAGTTCGTATTTTGCTGGATGATGGTACATCAAATATATTAATGA GGTCGATAGGTGGTCGCTCTGAGCCAGTTATTGGTTTGCACGGAGGAGCATTATTAGGTGTGGTTTATCGAACATCACGGAGGGTCAGCCCTGGTGCAGC AATGGCTATTTCAACTATCCAACCCATATCTGGATTTGGAAGTTCCTTCACAACAATTGATGACGCCATTCATCGATCTGCTGCAGAGGCAGCCCCTCAA AACTTTCAGTTATACAGTTGGGAAAGTTTTGAACCCGTGGGTGGTCTACTTCCTCAACCAGAATGGACTGCATGGGACCAAACTGTGGAATATTGTGCTT TTGCTTATCAACAATATATTGTAATATCATCTTTGCGCCCCCAATATAGATATCTTGGAGATGTCGCGATCCCCTATGCTACGGGAGGCAAGATTTGTAT TCTAATCATGAGACTATTCTTCAGATGTGTATTTGTGGATGCTGGAGTTGCAGCAATAGATATAGAAACAAAAAGGATGAAGGATGAAATGAAACTGAGA GAGGCACAGGCAAGAGCAGTTGCTGAGCATGGGGACCTAGCACTAATTGCAGTAGAAGGTCCTCAAGTTTCAGCACAAGAAAGAATAGCATTGCGGCCAC CAATGCTGCAGGTGGTTCGTCTAGCTTCATTCCAGTATGCTCCTTCAGTGCCACCTTTCTTATCGTTACCGAAACAAACTAGAGTGGATGGTGATGACTC GGGAATGCCAAAAGAGATGGAAGACAAAAAATATACTGAGGTAGCTGTTGGTGGCGGAGGAGTGTCTGTGGCTGTTACACGCTTTCCTACAGAACAGAAG CGACCAGTGGGGCCACTTGTTGTCATTGGTGTGAGAGATGGGGTTCTATGGCTCATTGATAGGTATAAAGATGAGGGTCTCCGTTTCCATTGTTTTTAG
AA sequence Show only first row Show all	>Lus10028092 pacid=23181116 polypeptide=Lus10028092 locus=Lus10028092.g ID=Lus10028092.BGIv1.0 annot-version=v1.0 MLRLKAFRPSNDKILKIQLHPTHPWLVTADASDRVSVWNWEHRQIIYELKAGGVDERRLVGAKLEKLAEGESEPRGKPTEAMKGGSVKQVNFYDDDVRFW QLWSNRAAAAEAPSAVNNVTSAFTSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQELDNRSLLCMEFLCRSTAGDGPLVAFGGSDGVIRVLSMIS WKLVRRYTGGHKGAIACLMTFMASSGEALLVSGGSDGLLVLWSADHVHDSRELVPKLSLKAHDGGVVAVELSRVLGGAPQLITIGVDKTLAIWDTMSFKE LRRIKPVPKMSCNSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLIPPQYIVPSKKLRVYCMVAHPLQPHLVATGTTVGVIISEFDP KSLPAVAPLPTPPGNREHSAVYVIERELKLLNFQLSNTANPSLGSNGSLSEAGKYKGDAAEQLHVKQIKKHISTPVPHDSYSVVSVSSSGKPLVLLKKDT MSSAHDGGVVAVELSRVLGGAPQLITIGVDKTLAIWDTMSFKELRRIKPVPKMSCNSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSS LIPPQYIVPSKKLRVYCMVAHPLQPHLVATGTTVGVIISEFDPKSLPAVAALPTPPGNREHSAVYVIERELKLLNFQLSNTANPSLGSNGSLSEAGKYKG DAAEQLHVKQIKKHISTPVPHDSYSVVSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGTARLLVWDTCRDRFGILEAAAPPRIPIIPKGGSSRKAKEA AAAQAAAAAATAASAATVQVRILLDDGTSNILMRSIGGRSEPVIGLHGGALLGVVYRTSRRVSPGAAMAISTIQPISGFGSSFTTIDDAIHRSAAEAAPQ NFQLYSWESFEPVGGLLPQPEWTAWDQTVEYCAFAYQQYIVISSLRPQYRYLGDVAIPYATGGKICILIMRLFFRCVFVDAGVAAIDIETKRMKDEMKLR EAQARAVAEHGDLALIAVEGPQVSAQERIALRPPMLQVVRLASFQYAPSVPPFLSLPKQTRVDGDDSGMPKEMEDKKYTEVAVGGGGVSVAVTRFPTEQK RPVGPLVVIGVRDGVLWLIDRYKDEGLRFHCF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	0	1
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	1.0	0.9803
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	1.4	0.9750
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	2.4	0.9748
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	3.5	0.9698
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	3.7	0.9637
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	3.9	0.9646
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	4.2	0.9646
AT4G39420			unknown protein		Lus10005786 [exp]	5.2	0.9600
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	6.0	0.9525
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	6.3	0.9615

Compare expression of checked genes

Lus10028092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.