Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24710 733 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040564 [exp] 889 / 0 AT5G24710 671 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10028092 [exp] 536 / 1e-174 AT5G24710 931 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10040563 [exp] 432 / 9e-138 AT5G24710 1338 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081800 [exp] 748 / 0 AT5G24710 1890 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028093 pacid=23181198 polypeptide=Lus10028093 locus=Lus10028093.g ID=Lus10028093.BGIv1.0 annot-version=v1.0 ATGAGGTCGATAGGTGGTCGCTCTGAGCCAGTTATTGGTTTGCACGGAGGAGCATTATTAGGTGTGGTTTATCGAACATCACGGAGGGTCAGCCCTGGTG CAGCAATGGCTATTTCAACTATCCAACCCATATCTGGATTTGGAAGTTCCTTCACAACAATTGATGACGCCATTCATCGATCTGCTGCAGAGGCAGCCCC TCAAAACTTTCAGTTATACAGTTGGGAAAGTTTTGAACCCGTGGGTGGTCTACTTCCTCAACCAGAATGGACTGCATGGGACCAAACTGTGGAGTATTGT GCTTTTGCTTATCAACAATATATTGTAATATCATCTTTGCGCCCCCAATATAGATATCTTGGAGATGTCGCGATCCCCTATGCTACGGGAGGTGTTTGGC ATCGGAGACAGCTTTTTGTAGCAACACCAACTACTATCGAATGTGTATTTGTGGATGCTGGAGTTGCAGCAATAGATATAGAAACAAAAAGGATGAAGGA TGAAATGAAACTGAGAGAGGCACAGGCAAGAGCAGTTGCTGAGCATGGGGACCTAGCACTAATTGCAGTAGAAGGTCCTCAAGTTTCAGCACAAGAAAGA ATAGCATTGCGGCCACCAATGCTGCAGGTGGTTCGTCTAGCTTCATTCCAGCATGCTCCTTCAGTGCCACCTTTCTTATCGTTACCGAAACAAACTAGAG TGGATGGTGATGACTCGGGAATGCCAAAAGAGATGGAAGACAAAAAATATACTGAGGTAGCTGTTGGTGGCGGAGGAGTGTCTGTGGCTGTTACACGCTT TCCTACAGAACAGAAGCGACCAGTGGGGCCACTTGTTGTCATTGGTGTGAGAGATGGGGTTCTATGGCTCATTGATAGATGTGTATTTGTGGATGCTGGA GTTGCAGCAATAGATATAGAAACAAAAAGGATGAAGGATGAAATGAAACTGAGAGAGGCACAGGCAAGAGCAGTTGCTGAGCATGGGGACCTAGCACTAA TTGCAGTAGAAGGTCCTCAAGTTTCAGCACAAGAAAGAATAGCATTGCGGCCACCAATGCTGCAGGTGGTTCGTCTAGCTTCATTCCAGTATGCTCCTTC AGTGCCACCTTTCTTATCTTTACCGAAACATACTAGAGTGGATGGTGATGACTCAGGAATGCCAAAAGAGATTGAAGATAAAAAATATACTGAGGTAGCT GTTGGTGGCGGAGGAGTGTCTGTGGCTGTTACACGCTTTCCTACAGAACAGAAGCGACCAGTGGGGCCACTTGTTGTCATTGGTGTGAGAGATGGGGTTC TATGGCTCATTGATAGGTATATGTGTGCGCATGCCTTATCTCTCAGTCATCCTGGTACTCGTTGTCGTTGTCTGGCTGCCTACGGAGATGCTGTTAGTGC AGTGAAATGGGCAAGCAGGCTTGGTAGAGAACATCATGATGATCTGGCAGAGTTTTTATTGGGAATGGGTTATGCTACTGAAGCGCTTCATTTGCCTGGA ATATCCAAAAGGTTGGAGTTTGATCTGGCCATGCAGAGTAGTGACTTGAAAAGAGCTCTTCAGTGCCTTGTTACTATGAGTAACAGCAGGGACATTGGGC AAGATGGTACTGGCCTTGAATTGAGCGACATCCTCAACTTGACTGTTAAGAAGGAAGATATTGTGGATGCTGTTCAGGGAGTTGTGAAATTTGCCAAGGA ATTTTTGGAGCTGATTGATGCTGCAGATGCTACTGCACAAACTGACATTGCTCGTGAAGCACTCAAGAGGTTAGCAGCTGCAGGCTCTGTGAAAGGAGCT TTACAGAGCCATGAATTACGAGGACTTGCTTTGCGCCTTGCTAATCATGGAGAGTTAACAAGACTAACTGGCTTGGTAAACAACTTGATTTCAATTGGAC TGGGGCGTGAAGCAGCATTTGCAGCAGCAGTGCTTGGGGATAATGCCCTCATGGAGAAAGCATGGCAGGACACTGGAATGCTTGCTGAAGCTGTCCTTCA TGCCCATGCTCATGGTCGACCAACACTGAAGAACATGGTCCAGTCTTGGAACAAAATGTTGCAGAAGGAAGTTGAACACGCTTCCTCGATAAAAACTGAT GCAGCATCTGCTTTTTTGGCATCCCTCGAGGAACCAAAGCTCACAAGTCTTGTAGATGCTGCGAAGAAGCCACCCATTGAAATTCTTCCTCCTGGAATGC CATCTCTAACTGGTCTAATTACAAGTCAGAAAAAACCAACCCCGGGTACTTTGAATGCGCAGAAGCAACCACCGAGTCAACCATTACAATTGGAGGCACC TCCAGCTACACAAGAACCAGGTGCTGCTCCTGCAGTAGCAGTAGCAACAGAGGGTCCTGCACCCGCAACTACTACTCCAGAACAAGACTCAGTGCCAGCA TTAGCAACAAGCGAACTCACTGCTGAAGGCCAAGCTACTATATCATCATCTGCTAGTAATCTGGATTTAACTGCATCATCGGATAAAGCTACTCTTCCTG AGCTAGCTACATCTGGAGAAGGTGTCCCTGCAGGTTCAGAAGAACACAAGGATGCAACAACAACACTGTCCCAAGAAGAACCACCCGTTCCAAGTAATGA GGAAGTAAGTGCTAACCCTCGCCCTATATTGACCACAACTGAGTTTCTTGCCTAA
AA sequence Show only first row Show all	>Lus10028093 pacid=23181198 polypeptide=Lus10028093 locus=Lus10028093.g ID=Lus10028093.BGIv1.0 annot-version=v1.0 MRSIGGRSEPVIGLHGGALLGVVYRTSRRVSPGAAMAISTIQPISGFGSSFTTIDDAIHRSAAEAAPQNFQLYSWESFEPVGGLLPQPEWTAWDQTVEYC AFAYQQYIVISSLRPQYRYLGDVAIPYATGGVWHRRQLFVATPTTIECVFVDAGVAAIDIETKRMKDEMKLREAQARAVAEHGDLALIAVEGPQVSAQER IALRPPMLQVVRLASFQHAPSVPPFLSLPKQTRVDGDDSGMPKEMEDKKYTEVAVGGGGVSVAVTRFPTEQKRPVGPLVVIGVRDGVLWLIDRCVFVDAG VAAIDIETKRMKDEMKLREAQARAVAEHGDLALIAVEGPQVSAQERIALRPPMLQVVRLASFQYAPSVPPFLSLPKHTRVDGDDSGMPKEIEDKKYTEVA VGGGGVSVAVTRFPTEQKRPVGPLVVIGVRDGVLWLIDRYMCAHALSLSHPGTRCRCLAAYGDAVSAVKWASRLGREHHDDLAEFLLGMGYATEALHLPG ISKRLEFDLAMQSSDLKRALQCLVTMSNSRDIGQDGTGLELSDILNLTVKKEDIVDAVQGVVKFAKEFLELIDAADATAQTDIAREALKRLAAAGSVKGA LQSHELRGLALRLANHGELTRLTGLVNNLISIGLGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNMVQSWNKMLQKEVEHASSIKTD AASAFLASLEEPKLTSLVDAAKKPPIEILPPGMPSLTGLITSQKKPTPGTLNAQKQPPSQPLQLEAPPATQEPGAAPAVAVATEGPAPATTTPEQDSVPA LATSELTAEGQATISSSASNLDLTASSDKATLPELATSGEGVPAGSEEHKDATTTLSQEEPPVPSNEEVSANPRPILTTTEFLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	1.7	0.9112
AT4G24290			MAC/Perforin domain-containing...		Lus10000175 [exp]	3.7	0.8852
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	4.9	0.8960
AT4G24840			unknown protein		Lus10009908 [exp]	5.7	0.8933
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	6.0	0.8964
AT5G64600			O-fucosyltransferase family pr...		Lus10020882 [exp]	8.4	0.8268
AT2G22530			Alkaline-phosphatase-like fami...		Lus10025722 [exp]	10.3	0.8357
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	11.0	0.8844
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	11.0	0.8933
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	12.4	0.8251

Compare expression of checked genes

Lus10028093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.