Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62440 479 / 1e-160 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 465 / 2e-156 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G24480 422 / 7e-143 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 430 / 2e-142 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 421 / 9e-138 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 396 / 3e-133 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 377 / 4e-126 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 382 / 7e-125 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 384 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 387 / 8e-124 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 407 / 3e-134 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10040566 [exp] 378 / 3e-124 AT1G12040 386 / 2e-124 leucine-rich repeat/extensin 1 (.1) Lus10039362 [exp] 365 / 2e-122 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 362 / 4e-120 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 362 / 5e-118 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 350 / 1e-115 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 343 / 4e-113 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 335 / 4e-110 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 335 / 3e-107 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151000 [exp] 510 / 7e-177 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 516 / 5e-175 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 428 / 1e-142 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 418 / 2e-140 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 402 / 2e-134 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 391 / 6e-132 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 394 / 1e-130 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 380 / 1e-128 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 394 / 1e-127 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 390 / 3e-123 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10028097 pacid=23181127 polypeptide=Lus10028097 locus=Lus10028097.g ID=Lus10028097.BGIv1.0 annot-version=v1.0 ATGTCTTCCACCTCCTCCTTTCTCTTTCTCCTCCTTCTCATCTCCTCCACGTTCCTCCTCCTCCCTCCTACATCCACCGCCGCCGTTACTGTCCCGCCCT CCCTCACTTTCCAAAACCCCCGCCTCCGCCAAGCCTATATTGCCCTCCAAACATGGAAACAGGACGCAATCTTCTCTGACCCTTTCAACTTCACCGCCAA CTGGAATGGCTCCAATGTCTGCTCCTACTCAGGCGTCTTCTGCGCCCCTTCTCCTTCCAATCCTACCCTCCGCGTTGTCGCCGGCATAGACCTCAACCAC GCCGACATCGCCGGCTACCTCCCTCCCGAGCTCGGCCTCCTCTCAGATCTCGCCCTCTTCCACATCAACTCCAACCGCTTCTGTGGCGTCGTTCCCAAAT CATTCCGTAAACTCAAACTCCTCCACGAGCTTGACCTCAGCAACAACCGATTTGTCGGCGAGTTCCCTACCGTCGTCATCTCATTACCTTCCTTGAAATT CCTAGATCTGAGATTCAACGACTTCGAAGGCTCTGTTCCTTCCTCGCTGTTTGATAAGCCGCTGGATGCCCTCTTCTTGAACGACAATCGATTCCGATTC GGGATCCCTGAGAATCTAGGCAACTCCCCTGTTTCTGTGCTTGTGTTCGCGAATAACAACCTCGGGGGTTGTATTCCTGGGAGTATTGGCAAGATGGGGA AGACGTTGAATGAGATTATTCTAATGAATGATAATCTCACTGGTTGTTTGCCTTCCGAGATCGGGATGTTGAAGCAAGTTACGGTGTTCGATGTTAGCTT CAACAGTCTTCAAGGTTCGTTGCCTTCTGCTATTGGGAGCATGAAGAAGCTGGAGCAGCTGAATGTGGCTCATAACCGTTTCACTGGAGTTATTCCGGCC AGCGTTTGCCAGCTCCCCAATCTCCACAACTTCACTTACTCTTTCAACTACTTCACTGGCGAGGCTCCCAGCTGTATCTTTCGATTCCCCTCCTTCGCCA CCATCGCCTTCTTCCAGGATCTCCCCAGTGACTCATCTTTCCCTGCCCCGCCCCCCCACCCGCCCCCCCCCCCGCCAGTCAACTCGCCCCCCCCTCCACC ACCGTCTCCCCCTCCGCCAGTCTACTCGCTACCTCCTCCTCCACCATCTCCCCCACCGCCACCGCCACCAGTTTACTCCCCACCGCCACCACCACCGGTT TACTCTCCACCGCCACCACCACCAGTTTACTCCCCACCCCCGCCACCACCGCCAGGTTACTCATCCCCGCCGCCGCCACTACCACCGGCTGAGATTCACC CACCTCCTTACTACCAACAGTCATCTCCGCCACCTCCTCCTCCACCGGCAGAGTCTCACCAACCTCCTTACTACCAGCAGTCATCTCCACCACCACCAGC TTCACATTCCCCTCCACCTCCACAAGCCGGATGTGAAGAACCGCCACCTGCATCAACAAGTTCACCACCGCCGACACCAACTGTGAAATCTCCTCCACCA GTGCATCATCAACAAAGTCCTCCACCGCCGCCTCCGGCAAGGCATTACACATACTCATCTCCTCCACCTCCGGTTCATTCACCACCGCCGCCATCACCTC CACCACCGAGTCCGGAGAGCGTACCGTTGCCACCAGTGGTAGGAGTATCGTACGCATCGCCACCGCCACCAACAATTCCATACTACTAG
AA sequence Show only first row Show all	>Lus10028097 pacid=23181127 polypeptide=Lus10028097 locus=Lus10028097.g ID=Lus10028097.BGIv1.0 annot-version=v1.0 MSSTSSFLFLLLLISSTFLLLPPTSTAAVTVPPSLTFQNPRLRQAYIALQTWKQDAIFSDPFNFTANWNGSNVCSYSGVFCAPSPSNPTLRVVAGIDLNH ADIAGYLPPELGLLSDLALFHINSNRFCGVVPKSFRKLKLLHELDLSNNRFVGEFPTVVISLPSLKFLDLRFNDFEGSVPSSLFDKPLDALFLNDNRFRF GIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPSEIGMLKQVTVFDVSFNSLQGSLPSAIGSMKKLEQLNVAHNRFTGVIPA SVCQLPNLHNFTYSFNYFTGEAPSCIFRFPSFATIAFFQDLPSDSSFPAPPPHPPPPPPVNSPPPPPPSPPPPVYSLPPPPPSPPPPPPPVYSPPPPPPV YSPPPPPPVYSPPPPPPPGYSSPPPPLPPAEIHPPPYYQQSSPPPPPPPAESHQPPYYQQSSPPPPASHSPPPPQAGCEEPPPASTSSPPPTPTVKSPPP VHHQQSPPPPPPARHYTYSSPPPPVHSPPPPSPPPPSPESVPLPPVVGVSYASPPPPTIPYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	0	1
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	1.7	0.8550
AT3G06890			unknown protein		Lus10006514 [exp]	2.8	0.8017
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	4.5	0.8301
AT3G05980			unknown protein		Lus10002455 [exp]	5.5	0.8462
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	15.5	0.7985
					Lus10012740 [exp]	18.8	0.7929
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	21.7	0.8152
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	22.9	0.8429
AT4G36750			Quinone reductase family prote...		Lus10011292 [exp]	27.1	0.7297
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031279 [exp]	28.3	0.7999

Compare expression of checked genes

Lus10028097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.