Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75340 193 / 4e-57 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040567 [exp] 581 / 0 AT1G75340 227 / 1e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10040585 [exp] 581 / 0 AT1G75340 227 / 1e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081100 [exp] 280 / 3e-90 AT1G75340 194 / 4e-57 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10028100 pacid=23181140 polypeptide=Lus10028100 locus=Lus10028100.g ID=Lus10028100.BGIv1.0 annot-version=v1.0 ATGCCCGTGAAGAGAGAACCTTGCAGGAACTTTCAGCGGGGAAGTTGCCAATACGGGGAAAGGTGTAGATATCTTCATGTAGTCCAGCAACAGCCAAAAC AAAGTAATCCCTTTGGATTTGGGTCTGGACAGCAACAGCAACAGAAACAGCAGCAGAGTTCCAACCCTTTTGGTTTTGGGGCCAAACAGCAGCAATTCAA GCCTTTTGAGAATAGATGGAGCCGTTCCAATCCTTCGGATAATGGAGCTGGTCATGTTCCATCATCCTCTAAACACCAACCTGATAGCAAATCCCAGGTT GCTAATCATACGTGCACGGACCCTGAATCCTGCAAACGTTCGATTGCTGAAGATTTTGAGCATGAGAGGCCAATTTGGAAGCTCACTTGCTACGGTCATG CCAGAAATGGTCCTTGTGACATTGTTGGCGACATTAGCTATGAAGAACTACGAGCTGCTGCTTATGAAGATGTCAAGTACGGGATAAATGTGCAGTCAAT TATTGAGAGGGAGAGAAATCTATCAAATTCTAAGTTGGTTGAGTTCCAGAACCTTCTCCAAACACCATATGTTGCTCGATCAGGATCTGCTGTGGGCATG CATGGAACCACTACCAATGAAATTTCACCTACTAGTTCAAGCAGCGCTCCCCTTCAAGTCTCTAGCTTTAGCCAACTCAGTCCATCTCTTAATACGGGGT TTGGAGCAAGACCCTCAGGACAGGTGACAAACAATGTCCCAAACCAACCAAATGCGTTATCGAATTCTTTTCCGACATTAAATCCATTTGGAGTGGGGCC ACCTTCACAAGTGAATAATTTGTTTGGGCAACCAAGTGTATTTCCAAACGCTACACAGAATGCAGGAGTATTTGGTACAAATAACATCGCTTCTGCAAAT GGTCCATTTGGAGGCCAACTTGACGGTCAGCACCACAGAAGTTCCTTTCCTAACGTTGCAGGATTTCCTACCAGCAGTGGAGTATCAAGTGGAGGAAGCA ATCTATTCTCTTCTTCTCAATCATTCACTGCGCAGAACCCTATTAGTTCCAATCTGAATGCAGAAACATCAAGTAGTCTGGCAGTAAATAGTGTCGAAAA GGAAAAGGCTTCTCCGGATAGGAGCATCTGGTCGAAAGAAACATGGAAACCCGGAGAGATCCCAGAAGAAGCGGGAGGAGGGGGACTGGAAAGAGGCAGG TTGTGGAGGAGGGGGGGGGGGGAGGAGGAGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10028100 pacid=23181140 polypeptide=Lus10028100 locus=Lus10028100.g ID=Lus10028100.BGIv1.0 annot-version=v1.0 MPVKREPCRNFQRGSCQYGERCRYLHVVQQQPKQSNPFGFGSGQQQQQKQQQSSNPFGFGAKQQQFKPFENRWSRSNPSDNGAGHVPSSSKHQPDSKSQV ANHTCTDPESCKRSIAEDFEHERPIWKLTCYGHARNGPCDIVGDISYEELRAAAYEDVKYGINVQSIIERERNLSNSKLVEFQNLLQTPYVARSGSAVGM HGTTTNEISPTSSSSAPLQVSSFSQLSPSLNTGFGARPSGQVTNNVPNQPNALSNSFPTLNPFGVGPPSQVNNLFGQPSVFPNATQNAGVFGTNNIASAN GPFGGQLDGQHHRSSFPNVAGFPTSSGVSSGGSNLFSSSQSFTAQNPISSNLNAETSSSLAVNSVEKEKASPDRSIWSKETWKPGEIPEEAGGGGLERGR LWRRGGGEEEEQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	8.5	0.6635
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	13.3	0.6569
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	17.8	0.6252
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	23.2	0.6186
AT3G45040			phosphatidate cytidylyltransfe...		Lus10037383 [exp]	25.2	0.6052
AT1G27060			Regulator of chromosome conden...		Lus10008730 [exp]	25.2	0.4995
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	29.4	0.6037
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	33.6	0.5701
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	45.7	0.6038
AT1G58025			DNA-binding bromodomain-contai...		Lus10036580 [exp]	52.9	0.5470

Compare expression of checked genes

Lus10028100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.