Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58130 68 / 9e-12 ROS3 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040568 [exp] 726 / 0 AT5G58130 213 / 1e-59 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040584 [exp] 726 / 0 AT5G58130 213 / 1e-59 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151300 [exp] 86 / 2e-17 AT5G58130 184 / 1e-49 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028101 pacid=23181266 polypeptide=Lus10028101 locus=Lus10028101.g ID=Lus10028101.BGIv1.0 annot-version=v1.0 ATGGTGATGTTCTTCCCAAGATTAGGGAAGCTGAAAACACTCACACTTATTGGAACTGGGAAGCATAGATACAGTTTCAGACGTGTTGATGTTCCTCCTC TTCCTAAACACTTCTGTGACTGTGAGGAGCATTCGCATTATGTTGCTGTTAAGAAACGAAATCCTGATCCAGAGTACAGACACGATGGGTTGAATGAGCA AGAAATTAACTTGATGAATTCGGTCATGGATCGGCTGCTCCAGAGAGAGAGTGGTGGGCAGCCTGACGTTGGTGCTGTTGATGTTAAGATGGCCAAAGAG GAACACAAGAAGAAAGAGCGAGCAGTGGAGGAACATCATCCGGTTGATAGCCATGAAGCCCTGCAAGTTGATGATGATAGTGAATCAGATGAGGATAGCA TCGTACTCAACATTGTGAGCAGGAAGCGGAAGTTTTCCTCCTCGACTAATCAGGAAGCCGGAGATTCTACATCTCTTATAAAGGAGATGAAGTCATTGCT CAATGGAGAAAACTATGTGAATGAATCCTCACAATCTGCCCATCAAAATAGTCAAAGATCTAAGAGTCAATTCTCTCTGGGAACTAACATTGTTGAAACG GAAAAAGGCATCAGAGGATCAAATCCAATTGTCGCAGAGAAGAAAAGGTCCTCGTGGAAAGAACATGTTGGTAATGGCAGTAGTAGCACATTCAATATAT CTGAAGTACTGCCAGGATTAGGTTCCAACAAGAAGAAAGTCAGAAAATCAGATGATATTGCCAAATCCGATCAAGTTGAGAAGAGGGAATGCCAAGTAGA TGGTAGCAATAACCAGTTTAGTATCTCTGGAGTATTGACAGGTCCAGCTTCCAACAAGAAGGATCAATCCAACTCAGATGATATGATCCGTACCAGTTCT GACAAGGAGACATCGTCAGGAGACGAAGAGAGTGAATCGGAATTAAGTAATACAGCAGTTACTGGCATTGGTAAACCCCGTACATCCGGCATTTTGGAAG CATTGACAAATATAGACGTCAGCAGTCATGAGGAAGCTAAATCTGATGATGATGAGAAACTCTGTGATGATGACAATAATGAATTAAGTGAAGAAGAAAT GTTGGAGGATGTCGAAAATGCTGAAGATGTCAAGAAGGCCTCCACGCCAGATAAGACGGCAGGCAGGGGTTCAGCATGGCTTCACAAGTGCTCGTGGACG CAGTTGGTTAGTGGGAATAACAGCAGTTTATTCAGCATCTCTCAGATCTTGCCCGGCGGGGATCCAGAGAAGCAAGAACCAGTAGTAGGTGAAGCTGTCA AAGTTGTTAGTTCCACAAGCAGTCAAGTTGATGATGATAAAGGTAGTGAACCTATCCAGCATTTGGTGGTCAACCAGGAAGAGAGAAATGTAGAAGGCTG TGCTGAAGTTGGTCAGGTTGCAGACAAGAATGAAGAATGCGAGTCAAAAGTGGGTTTAGTAAGGAAGAAACTGGTTGGAGAAACTTGCTCGTTTATGAGA AGTGCTGCATCCTTAAAAGAGTGGGCAAAGGCTAAAGAAGCTCGCAGCAGATCACGTAAAAAGAGGAAGCCGTAA
AA sequence Show only first row Show all	>Lus10028101 pacid=23181266 polypeptide=Lus10028101 locus=Lus10028101.g ID=Lus10028101.BGIv1.0 annot-version=v1.0 MVMFFPRLGKLKTLTLIGTGKHRYSFRRVDVPPLPKHFCDCEEHSHYVAVKKRNPDPEYRHDGLNEQEINLMNSVMDRLLQRESGGQPDVGAVDVKMAKE EHKKKERAVEEHHPVDSHEALQVDDDSESDEDSIVLNIVSRKRKFSSSTNQEAGDSTSLIKEMKSLLNGENYVNESSQSAHQNSQRSKSQFSLGTNIVET EKGIRGSNPIVAEKKRSSWKEHVGNGSSSTFNISEVLPGLGSNKKKVRKSDDIAKSDQVEKRECQVDGSNNQFSISGVLTGPASNKKDQSNSDDMIRTSS DKETSSGDEESESELSNTAVTGIGKPRTSGILEALTNIDVSSHEEAKSDDDEKLCDDDNNELSEEEMLEDVENAEDVKKASTPDKTAGRGSAWLHKCSWT QLVSGNNSSLFSISQILPGGDPEKQEPVVGEAVKVVSSTSSQVDDDKGSEPIQHLVVNQEERNVEGCAEVGQVADKNEECESKVGLVRKKLVGETCSFMR SAASLKEWAKAKEARSRSRKKRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10028101 [exp]	0	1
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	10.8	0.7662
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	12.8	0.7431
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	21.3	0.7648
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	45.2	0.7428
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	56.4	0.7473
AT5G09580			unknown protein		Lus10007099 [exp]	66.5	0.7366
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	73.7	0.6654
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10030363 [exp]	76.0	0.6962
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	95.1	0.6996
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	100.4	0.7060

Compare expression of checked genes

Lus10028101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.