Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58110 239 / 4e-81 chaperone binding;ATPase activators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040580 [exp] 376 / 4e-135 AT5G58110 266 / 2e-91 chaperone binding;ATPase activators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080900 [exp] 261 / 2e-89 AT5G58110 222 / 4e-74 chaperone binding;ATPase activators (.1) Potri.018G151500 [exp] 254 / 7e-87 AT5G58110 232 / 6e-78 chaperone binding;ATPase activators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0648 [flax] [poplar] Aha1_BPI PF09229 [flax] [poplar] Aha1_N Activator of Hsp90 ATPase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10028103 pacid=23181255 polypeptide=Lus10028103 locus=Lus10028103.g ID=Lus10028103.BGIv1.0 annot-version=v1.0 ATGGAAAATGGAAACGAGAGAAAAGAGGAGACGCAGCAAGGATCTTCTTATACATATTGGGTAAGGGAAGCCACCGCGGATGCAGCTCCTGCCCCTCTTC CTAAGAAGCTCTCTCCTCAAGATATTGTCACTGCTCAGCCTAAACCTAACGCCCTTGGATCGGTCTGGAATCGGGCAGGAACTTGGGAGGAGAAGAACCT TAATAAATGGGCAAGTGAGAGGATAAAGGAGCTGCTTACATCAGTGGGATCTTTGGATTTCTCTGGCGGTAAAGCAGAAATAAAACAAGTTTCTAAGTGT TCAGGCGATGCTTTCTTGGTTACTGTCAGAAACAAGAAACGTGTTGGCTATACCTACGAATTAACCTTAGACATTAAAGGAGAATGGATGATCCAAGAGG AAACAAAGACAATTCATGGACATGTTGATATCCCTGAGTTCTCTTATGGTGAGCTGGATGATTTACAGTTTGAGGTACGGCTCAACGACATAACAGACTT GTCGCAGCAGGAAAAGCAACGGATCAACAGAGACGTGAAGTCATTTATGGAGCCAGTGCGGGAGAAATTGTCCGAATTCGAGCAGGACCTTAGGGATAGG TAG
AA sequence Show only first row Show all	>Lus10028103 pacid=23181255 polypeptide=Lus10028103 locus=Lus10028103.g ID=Lus10028103.BGIv1.0 annot-version=v1.0 MENGNERKEETQQGSSYTYWVREATADAAPAPLPKKLSPQDIVTAQPKPNALGSVWNRAGTWEEKNLNKWASERIKELLTSVGSLDFSGGKAEIKQVSKC SGDAFLVTVRNKKRVGYTYELTLDIKGEWMIQEETKTIHGHVDIPEFSYGELDDLQFEVRLNDITDLSQQEKQRINRDVKSFMEPVREKLSEFEQDLRDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	0	1
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	1.4	0.8596
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	1.7	0.8992
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	4.0	0.8486
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	4.9	0.8364
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10022411 [exp]	5.3	0.8236
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	5.5	0.8225
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	8.5	0.8283
AT1G07170			PHF5-like protein (.1.2.3)		Lus10040654 [exp]	9.5	0.8409
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	11.6	0.8476
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	11.6	0.8341

Compare expression of checked genes

Lus10028103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.