Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58090 729 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 613 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 535 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 485 / 4e-169 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 483 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 481 / 1e-167 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G18220 474 / 5e-165 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 473 / 2e-164 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 470 / 3e-163 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 443 / 5e-153 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040579 [exp] 951 / 0 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 588 / 0 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 568 / 0 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 567 / 0 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 495 / 2e-173 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 489 / 5e-171 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 476 / 9e-166 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039095 [exp] 461 / 7e-160 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10006811 [exp] 462 / 1e-159 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080600 [exp] 757 / 0 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 744 / 0 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 630 / 0 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 627 / 0 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 587 / 0 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 508 / 2e-178 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 493 / 2e-172 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.019G032900 [exp] 484 / 6e-169 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G072300 [exp] 484 / 6e-169 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 456 / 5e-158 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10028104 pacid=23181207 polypeptide=Lus10028104 locus=Lus10028104.g ID=Lus10028104.BGIv1.0 annot-version=v1.0 ATGGGGAGTGGAATAGGTGCAAACTGGGGCACACAAGCAACCCACCCTCTAGACCCTGACATTGTGGTGAGGCTGCTGAGGGATAATGGGATCCAAAAGG TTAAACTTTTCGATGCAGACTATGACACTCTTAGAGCCCTTGGAAAATCTGGGATTGAAGTCATGGTTGGCATCCCAAATGATATGCTTGCTTCAATAGC TGCCAAAGTGAAAAATGCAGAGGAATGGGTCTCCCAAAATGTATCCAAGCATATCACCACTGATAATGTGAACATCAGATACGTTGCTGTTGGAAATGAG CCCTTTCTGCAAACATACAATGGAAGCTTTCTCAGGACAACCTTCCCTGCTCTCCGCAATGTACAATCAGCCCTTATAAAAGCTGGGCTTGCTAACCAAG TGAAGGTCACTTGTCCGCTGAATGCTGATGTCTACGAGAGTGCAAGTGGCCTTCCATCTGGAGGTGACTTTCGTCAAGATATACATGGTTATATGCTTGA AATCGTCAAATTTCTGAGTGAAACCGGTTCACCATTCACCGTGAACATCTATCCTTTCATAAGTCTATACATTGATTCCAACTTCCCTGCTGAATATGCT TTCTTTGATGGAGATTCAACGCCTTTGAATGACGGTGGAATGTCCTACACCAACATGTTTGATGCCAACCATGACACTCTTGTGCATGCTTTAGAGAAGA ATGGGTTCGGTAACATGCCCATAATCATTGGAGAAATCGGGTGGCCAACTGATGGTGACCGGAATGCTAATGTAGAATTAGCCCGCCGATTCAACCAAGG GTTCATGTCACGTATTTCAGGTGGGAAAGGAAGTCCAATGAGGCCTGGTCCTATTGATGCCTACTTGTTTAGCCTAATCGACGAGGATGCAAAAAGTATC GATCCAGGAAATTTTGAACGGCACTGGGGTATATTTACATTTGATGGACAACCCAAGTATCTGCTCAACCTTGGGACCACGAATTCCGGACGTCTGATCC CAGCAAAAGGTCTTAGCTACCAGGAAAGGAAATGGTGTGTAATGAGGCCATCTGCCAGGCTTGATGATCCTCAAGTACCACTAAGTGTTAGCTATGCCTG TAGTCTTGCCGACTGCACTAAACTTGGTTATGGTACATCCTGTGGCAACTTAGACGCCAGGGGAAACATTTCTTTTGCATTCAACAGTTACTTTCAAATC CAAGATCAAAAGGATGAGGCTTGCAAGTTTCCAAATTTATCGACAATTGTCAAAACAGACCCATCACAAGGAACATGCAAGTTTGACATAATGGTCCAAC CATATTATGGAGCTGCAGATAGACTAGCGACACAGCTGGGCTTTCTAGCAGTTGCTTTAATTTCACTGTCGTCTCTGTGGATTTAG
AA sequence Show only first row Show all	>Lus10028104 pacid=23181207 polypeptide=Lus10028104 locus=Lus10028104.g ID=Lus10028104.BGIv1.0 annot-version=v1.0 MGSGIGANWGTQATHPLDPDIVVRLLRDNGIQKVKLFDADYDTLRALGKSGIEVMVGIPNDMLASIAAKVKNAEEWVSQNVSKHITTDNVNIRYVAVGNE PFLQTYNGSFLRTTFPALRNVQSALIKAGLANQVKVTCPLNADVYESASGLPSGGDFRQDIHGYMLEIVKFLSETGSPFTVNIYPFISLYIDSNFPAEYA FFDGDSTPLNDGGMSYTNMFDANHDTLVHALEKNGFGNMPIIIGEIGWPTDGDRNANVELARRFNQGFMSRISGGKGSPMRPGPIDAYLFSLIDEDAKSI DPGNFERHWGIFTFDGQPKYLLNLGTTNSGRLIPAKGLSYQERKWCVMRPSARLDDPQVPLSVSYACSLADCTKLGYGTSCGNLDARGNISFAFNSYFQI QDQKDEACKFPNLSTIVKTDPSQGTCKFDIMVQPYYGAADRLATQLGFLAVALISLSSLWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10028104 [exp]	0	1
AT4G17240			unknown protein		Lus10039062 [exp]	1.4	0.9261
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	3.3	0.9276
AT4G17240			unknown protein		Lus10038797 [exp]	7.4	0.9180
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	10.4	0.9154
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	11.4	0.9215
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	13.7	0.9047
AT5G48660			B-cell receptor-associated pro...		Lus10011842 [exp]	14.6	0.8449
AT5G65120			unknown protein		Lus10016802 [exp]	19.4	0.9001
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	20.2	0.9068
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	21.7	0.9189

Compare expression of checked genes

Lus10028104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.