Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26250 515 / 1e-179 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT3G52160 502 / 5e-176 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT1G19440 435 / 2e-148 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G26640 423 / 4e-144 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT2G16280 422 / 9e-144 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 416 / 1e-140 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 411 / 2e-139 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G04220 405 / 8e-137 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G25450 396 / 1e-133 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT5G43760 390 / 5e-131 KCS20 3-ketoacyl-CoA synthase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016528 [exp] 528 / 0 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10040796 [exp] 526 / 0 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10009799 [exp] 482 / 6e-167 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10042318 [exp] 439 / 3e-150 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 439 / 4e-150 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10012611 [exp] 435 / 2e-148 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 434 / 6e-148 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 433 / 9e-148 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10001657 [exp] 431 / 6e-147 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080400 [exp] 711 / 0 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G218000 [exp] 526 / 0 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.009G116700 [exp] 437 / 2e-149 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 436 / 7e-149 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.018G032200 [exp] 432 / 1e-147 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 426 / 3e-145 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G196200 [exp] 426 / 4e-145 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.002G178000 [exp] 424 / 4e-144 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.008G160000 [exp] 416 / 3e-141 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.014G104300 [exp] 416 / 6e-141 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10028105 pacid=23181215 polypeptide=Lus10028105 locus=Lus10028105.g ID=Lus10028105.BGIv1.0 annot-version=v1.0 ATGACAAGGGAGCAAGACCGTCTCGCCACCGAAATCCTCAACCGCGGCATCGAGGATTCAGGACCCTACGCTGGTTCCCAGAGCTTCTCTGTTAAGGTTC GACACAGGCTCCCTGATTTTCTCAGCTCAATCAACTTGAAATATGTCAAGCTTGGCTACACCTACCTTCTCAATCATGCCCTTTACTTGTTGCTTCCCCC AATTCTACTGCTTCCCATCTTCACTCCCCAACTTGGTTGGGAAAATGCCATACCCAACTACCAACCTCTTGATGCTCTCTACATCTCTGGATTCTTTCTT CTCATTGTTTACATCTACTTTGACTTGGCTCCTCGTTCTGTTTATCTCGTTAATTTTGCTTGTTACCGTCCACCAAATCACCTAAAGATATCAAAGAAGG AGTTCATTCGTCTCGCAAAGGAATCTGGCCATTTCAACGATGCTTCGATCGAGTTCCAGCACCACAGATTGAAAAATTCCGGCATTGGGGACGAAACTTA CATGCCAAGATCGGTTTTCCGCTCCAGTGAGAAGATCACCCTCAAGGATGGCAGGGAAGAAGCTGCTATGGTGATGTTTGGTGCGGTGGACGACCTCCTT GCTGCTACGAAAATCCGGCCTAAAGACATCAAGATCCTTGTTGTCAACTGTGGGGTTCTCAACACCACACCCTCCCTAGCAGCCATGTTGATAAACCATT ACAAGCTCAAGCACAACATCAACAGTTACAGTCTTGGTGGGATGGGTTGTGCTGCTGGAATCGCAGCTATCGATCTAGCAAGAGACCTTCTTACTGCTTA CCCGGGTTCTTATGCTCTGGTAGTGAGCACTGAAGCAGTGAGCTTCACATGGTACAATGGGAATGAAACTGATATGCTCCTTCCCAACTGCTTCTTCAGA ATGGGAGCTGCTGCTATGCTTCTATCCAGCCGCCGTCTTGACAGATGGCGCTCTAAATATGAACTGAAACAGATTGTACGAACACACAAAGGCATGGATA ATAGAAGCTTCAGAAGCATCCATATAAAGGAAGATGCAGAAGGGAAGAAAGGCATCTCAGTGAGTAAAGATGTGATTGAAATTGGAGGCCATGCACTTAA GGCCAACATTACAACATTAGGACCCCTGGTTCTTCCTGTATCAGACCAATTCCATTTCTTCACCAACTTGCTATTCAAAAAAAAGATCAAGCCTTACATC CCTGACTACAAACTTGCCTTTGACCACATATGCATCTTGGCAACAAGTAAGAAAGTGCTAGACGAGTTGCAGAACCACTTGGAACTCACAGAGGAGTACA TGGAGGCGTCCAGGAAGACTCTCGAGAGGTTCGGGAACACTTCGAGCAGTAGCGTGTGGTATGAGCTAGGTTACCTGGAAGCAAACTCTCGCATCCAAAG AGGAGACAGGATCTGGCAAATTGCTTTCGGTTCTGGTTTCAAGTGTAACAGTGTCGTCTGGAAGGCTCTTAAGAACGTTAGGAAAGCTGAAGTTAGTCCA TGGTTTCCAGATTCTTAA
AA sequence Show only first row Show all	>Lus10028105 pacid=23181215 polypeptide=Lus10028105 locus=Lus10028105.g ID=Lus10028105.BGIv1.0 annot-version=v1.0 MTREQDRLATEILNRGIEDSGPYAGSQSFSVKVRHRLPDFLSSINLKYVKLGYTYLLNHALYLLLPPILLLPIFTPQLGWENAIPNYQPLDALYISGFFL LIVYIYFDLAPRSVYLVNFACYRPPNHLKISKKEFIRLAKESGHFNDASIEFQHHRLKNSGIGDETYMPRSVFRSSEKITLKDGREEAAMVMFGAVDDLL AATKIRPKDIKILVVNCGVLNTTPSLAAMLINHYKLKHNINSYSLGGMGCAAGIAAIDLARDLLTAYPGSYALVVSTEAVSFTWYNGNETDMLLPNCFFR MGAAAMLLSSRRLDRWRSKYELKQIVRTHKGMDNRSFRSIHIKEDAEGKKGISVSKDVIEIGGHALKANITTLGPLVLPVSDQFHFFTNLLFKKKIKPYI PDYKLAFDHICILATSKKVLDELQNHLELTEEYMEASRKTLERFGNTSSSSVWYELGYLEANSRIQRGDRIWQIAFGSGFKCNSVVWKALKNVRKAEVSP WFPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	1.0	0.8946
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	1.7	0.8703
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10013251 [exp]	2.0	0.8530
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	5.1	0.8721
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10009914 [exp]	6.7	0.8326
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	7.1	0.8252
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	7.7	0.8495
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	10.4	0.8190
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	11.0	0.8327
					Lus10014515 [exp]	11.7	0.8474

Compare expression of checked genes

Lus10028105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.