Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25360 915 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 513 / 1e-171 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 488 / 6e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 441 / 3e-144 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33990 439 / 2e-142 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 436 / 5e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 427 / 2e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 426 / 7e-139 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 427 / 7e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 416 / 5e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040577 [exp] 677 / 0 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 511 / 1e-170 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 482 / 4e-154 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 466 / 1e-153 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 474 / 5e-151 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031994 [exp] 455 / 1e-148 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 452 / 2e-147 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 414 / 1e-134 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 412 / 2e-133 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 1041 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 495 / 4e-165 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 491 / 5e-163 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G048800 [exp] 471 / 3e-155 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 450 / 7e-147 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 451 / 1e-145 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 433 / 7e-140 AT3G22690 570 / 0.0 unknown protein Potri.012G041200 [exp] 429 / 1e-138 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 425 / 3e-138 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G237100 [exp] 427 / 4e-138 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028106 pacid=23181175 polypeptide=Lus10028106 locus=Lus10028106.g ID=Lus10028106.BGIv1.0 annot-version=v1.0 ATGTTGGTGCAATGGCAAACCTATACGCTTCCTTTCTCTACCAACTCTCTTCTCCACATCAAACCCGTCTCTCCTCCTCCCCTCCCCAGGACTGTCCATG CCCACGCCATTGCTTCAGGATTCAACCTCCGCGGCCCCATCTTGAACCGCCTCATCGACATTTACTGCAAGTTCCGCCGCCTACAGTATGCCCGCCGACT GTTCGATGAAATTCCTCACCCGGATATAGTGGCTAGAACGACCATGATTGCTGCCTACTCTGCTTCTGGGAGCATGAGCCTCGCCAGGTCAGTATTTAGA GGCACGCCATTGGGGATGCGGGACTCAGTTTTCTACAACGCCATGATTACCGCTCACTCCCGTGACAATCCTGCTATCCAGCTCTTTTGTGCGATGCAGA GGGAAGGCTTCCGGCCTGATAATTTCACCTTTACCAGTGTTATTGCTGCGGTGGCGCTTGTTGCAGAGAGTGAGAAGCACTGCCAGATGTTGCATTGCGT GGTTGTCAAGTCCGGAACTGGGTTTGTTACTTCGGTGTTGAATGCACTTGTATCTGCTTATGTCAAGGTTGCATTGCCTCCTTTTGTGAGATCGCCTTCA TCAGTGATGTGTTCTGCCAGAATGTTGTTTGCGGAAATGCCGGTTCAAGATCAGTTGTCGTGGACGACAATGATTACTGGTTATGTGAAAAATGATAACC TTGATGAAGCCAAAGAGTTGTTTGATGGAATGACGGAAAAGTTGCTGGTTGCCTTGAACGCTATGATTTCAGGTTATGTGCATAGAGGCTTGTTGCAAGA ACCTTTCAAGATGTTTAATAAGATGTATTTATCCGGAGTTCAATTTGATGAGTTTACATACACTAGCATTATAAGTGCATTCGCCAATGCTAGGTTCCAT CTTCTTGGCAAGCAGATACATGCTCACGTTATCATTTCTAGTCCTAACCCTAAACCAGATTTACAGTTGCCTGTGAATAATGCGTTGCTTACATTGTACT CGAAATGTGCTAGACTTGATGATGCTCGACTTGTATTCAATAAGATGCCGGGGAAAGACCTCGTTTCATGGAATGCGATGCTTTCAAGCTATGTTAATGG TGGACATATGGATGAAGCTAAATCAATTTTCCAAGAGATGCCGGAGGGGAACCTTCTGACATGGGCAGTGATGATATCAGGGTTAGCACAGAACGGATTA GGTGAAGAGGGTTTGAAGCATTTCAATAAGATGAAACTGCAGGGTTTTGATCCGTGCGATTATGCATTTGCTGGAGTGATTACTTCATGTGCTTCACTTG GATCGTTGAAGTCTGGACGGCAGCTCCATTCTCAGCTTATCCGGTTAGGTTTCGAGTCAAGTCTTTCAGTAGGAAATGCATTGATTACAATGTATGGAAG ATGTGGTGTTGTTGAGGATGCACGGACTCTATTTCGCACTATGCCATCCGTAGATTCAATATCATGGAATGCAATGATTGCTGCCCTGGGCCAGCATGGA CATGGCGTGCAAGCTATACAACTTTTTGAAGAGATGTTGAAGGAAGGTATATTGCCTGATCGGATTACCTTTCTAACAGTTCTCTCTGCTTGCAGCCACG CAGGTTTAGTCAAAGAAGGGAATCGATCTTTTGATGCAATGCATGATAGTTATGGCATAACCCCGGGCCAGGATCATTATGCCCGCATGGTTGATTTGTT TTGTCGAGCTGGAAAGTTTGCAGAAGCAGAAGATATGATTAGAAAAATGGCATTTCAGCCAGGCCCACAAATATGGGAAGCTTTTCTTGCAGGTTGTCGT AATCATGGCAATATGGAATTGGGGATCCAGGCTGCTGAACGCCTCTTTGCGATGATTCTCCAAAATGAGGGAACCTATGTCTTTCTGTCAAATACGTATG CTGCAAAAGGGCTTTGGAATAATGTGTCAAAAGTAAGGAAATTGATGAGAGACCAAGGGGTGAAGAAGGAGCCTGCGTGTAGTTGGGTTGATGCTGAAAA CAAGGTCCATGTATTCTTGGTTGATGACACTGCACATCCTGAAATACAAGATTCGTTTTGCATGATATGGAATCTGACCGAAAGGAACATGCCCTTTCTA CTCAAAGTGAAACTTGCAGTTGCTTTTGGGCTCATGAAACTCCCACCTGGAGCGACTGTTAGGGTCTTCAAGAACATTAGGATCTGCGGCGATTGCCACA ATGCTATCAAATATATTTCAAAACTAGTGGGGAGGGAGATTGTCGTGAGGGATGGTAAGCGGTTTCATCACTTCAGGGATGGTGACTGTTCTTGCGGAAA CTATTGGTAG
AA sequence Show only first row Show all	>Lus10028106 pacid=23181175 polypeptide=Lus10028106 locus=Lus10028106.g ID=Lus10028106.BGIv1.0 annot-version=v1.0 MLVQWQTYTLPFSTNSLLHIKPVSPPPLPRTVHAHAIASGFNLRGPILNRLIDIYCKFRRLQYARRLFDEIPHPDIVARTTMIAAYSASGSMSLARSVFR GTPLGMRDSVFYNAMITAHSRDNPAIQLFCAMQREGFRPDNFTFTSVIAAVALVAESEKHCQMLHCVVVKSGTGFVTSVLNALVSAYVKVALPPFVRSPS SVMCSARMLFAEMPVQDQLSWTTMITGYVKNDNLDEAKELFDGMTEKLLVALNAMISGYVHRGLLQEPFKMFNKMYLSGVQFDEFTYTSIISAFANARFH LLGKQIHAHVIISSPNPKPDLQLPVNNALLTLYSKCARLDDARLVFNKMPGKDLVSWNAMLSSYVNGGHMDEAKSIFQEMPEGNLLTWAVMISGLAQNGL GEEGLKHFNKMKLQGFDPCDYAFAGVITSCASLGSLKSGRQLHSQLIRLGFESSLSVGNALITMYGRCGVVEDARTLFRTMPSVDSISWNAMIAALGQHG HGVQAIQLFEEMLKEGILPDRITFLTVLSACSHAGLVKEGNRSFDAMHDSYGITPGQDHYARMVDLFCRAGKFAEAEDMIRKMAFQPGPQIWEAFLAGCR NHGNMELGIQAAERLFAMILQNEGTYVFLSNTYAAKGLWNNVSKVRKLMRDQGVKKEPACSWVDAENKVHVFLVDDTAHPEIQDSFCMIWNLTERNMPFL LKVKLAVAFGLMKLPPGATVRVFKNIRICGDCHNAIKYISKLVGREIVVRDGKRFHHFRDGDCSCGNYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	0	1
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	8.5	0.8651
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10020429 [exp]	9.2	0.8538
AT3G05980			unknown protein		Lus10002455 [exp]	12.0	0.8435
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	14.3	0.8487
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	14.6	0.8521
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	15.5	0.8504
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	22.6	0.8356
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	23.8	0.8407
AT2G44530			Phosphoribosyltransferase fami...		Lus10027908 [exp]	24.0	0.8276
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	26.8	0.8371

Compare expression of checked genes

Lus10028106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.