Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02230 353 / 4e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59480 288 / 3e-97 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 269 / 3e-90 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 241 / 3e-79 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 201 / 1e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024382 [exp] 395 / 4e-139 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 392 / 5e-138 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 296 / 1e-100 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 269 / 2e-89 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 267 / 5e-89 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10038016 [exp] 239 / 2e-77 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 235 / 4e-77 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10001574 [exp] 236 / 4e-75 AT5G59480 323 / 4e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 219 / 2e-70 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086900 [exp] 365 / 2e-127 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 279 / 8e-94 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 274 / 1e-90 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G185300 [exp] 261 / 3e-86 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 256 / 2e-84 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 211 / 2e-67 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 204 / 6e-65 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028107 pacid=23181128 polypeptide=Lus10028107 locus=Lus10028107.g ID=Lus10028107.BGIv1.0 annot-version=v1.0 ATGGAGTATCAGAATTGCTATCATTTTCAAGCAGAGAGCACAAAATATGATTGCCTCCTATTCGATCTAGACGACACCCTTTACCCGTATAGCGCTGGTC TTGCAGCAGCTTGTGGGCAAAATATTAAGGATTACATGGTTGAACACCTTTGCATTCCTAGAAGTGAAGTTGTTGAGTTGGGAAACCTGCTATACAAGAA CTATGGCACCACAATGGCTGGTCTCAGGGCAATTGGCTACAACTTTGATTATGATGAGTACCACGGCTATGTACATGGAAGATTACCTTATGAGAACTTG AAGACTGACCTTATTCTGAGAAACTTGCTAATAAACCTGCCAATTCGCAAAGTTATCTTTACGAATGCGGACAAAGTGCATGCGCATAAGGCCCTAAAGA GGCTAGGATTAGAGGATTGTTTTGATGGCATACTTTGCTTTGAGACACTGAATAATCCCATCATCCACAAAACCAATGATGACAATGTCATCATCCTCGC AGATTCAACAACAGCTAAGGGTCCTGGAATTATCTTTGACATTATTGGTCATTTTGCTAAACCAAACCCAAATTCTCTACCACTCCCAAAGTCACCCGTT ATTTGCAAGCCATCTGAAGCTGCCATTCAGCTTGCCCTTAAGATAGCCAACATCAATCCTGAGACAACTTTGTTCTTCGAAGATAGCGTGCGGAACATTC AATCTGGCAAGCGTGTGGGGCTACATACTGTACTTGTTGGGACTTCGCAGACAGTCGAAGGTGTAGATTTTTCCTTGGAAAGCATCCATCACGTCAGACG AGCAATTCCACAACTATGGGAAACTTCTGACGCTAAGAAATCATCATCAGAAATTGGGTATTCAGGAAAAGTTGCAGTTGAACAATCTGTCACTGGTTAA
AA sequence Show only first row Show all	>Lus10028107 pacid=23181128 polypeptide=Lus10028107 locus=Lus10028107.g ID=Lus10028107.BGIv1.0 annot-version=v1.0 MEYQNCYHFQAESTKYDCLLFDLDDTLYPYSAGLAAACGQNIKDYMVEHLCIPRSEVVELGNLLYKNYGTTMAGLRAIGYNFDYDEYHGYVHGRLPYENL KTDLILRNLLINLPIRKVIFTNADKVHAHKALKRLGLEDCFDGILCFETLNNPIIHKTNDDNVIILADSTTAKGPGIIFDIIGHFAKPNPNSLPLPKSPV ICKPSEAAIQLALKIANINPETTLFFEDSVRNIQSGKRVGLHTVLVGTSQTVEGVDFSLESIHHVRRAIPQLWETSDAKKSSSEIGYSGKVAVEQSVTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10028107 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	4.2	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	5.8	1.0000
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	7.3	1.0000
					Lus10038707 [exp]	8.5	1.0000
AT2G20825	ULT	ULT2	ULTRAPETALA 2, Developmental r...		Lus10038586 [exp]	15.3	1.0000
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038144 [exp]	15.5	1.0000
					Lus10039663 [exp]	17.2	1.0000
AT1G68570			Major facilitator superfamily ...		Lus10038648 [exp]	17.5	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	19.0	1.0000
					Lus10006079 [exp]	19.9	1.0000

Compare expression of checked genes

Lus10028107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.