Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042813 [exp] 340 / 5e-118 ND / Lus10029786 [exp] 333 / 6e-117 ND / Lus10028571 [exp] 306 / 2e-106 ND / Lus10018877 [exp] 303 / 4e-105 ND / Lus10028570 [exp] 232 / 5e-77 ND / Lus10028110 [exp] 228 / 1e-75 ND / Lus10028894 [exp] 218 / 1e-71 ND / Lus10008920 [exp] 214 / 3e-70 ND / Lus10042472 [exp] 206 / 3e-67 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193200 [exp] 296 / 2e-102 ND / Potri.002G067000 [exp] 289 / 1e-99 ND / Potri.019G002400 [exp] 223 / 9e-74 ND / Potri.001G307100 [exp] 222 / 2e-73 ND / Potri.001G306932 [exp] 209 / 2e-68 ND / Potri.001G307000 [exp] 197 / 1e-63 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10028109 pacid=23166568 polypeptide=Lus10028109 locus=Lus10028109.g ID=Lus10028109.BGIv1.0 annot-version=v1.0 ATGGAGCTCGGTCGTCTGAGTCACAACAGTGTGCTTCTTCTCCTGATGGTCATAATCTTCAAATCAACATTATTATCACCAGTCTGCGCAGCTGTTGCCA GTGATCCTACAGATGGATTCACCGAGATCCCATTGAATGAAACCAACTTGGTCCTCCAGAAACCATACAACATCCCTCTCGACCAGCGCTACAGTTTCGT CAACGGTACCCACCGCATGTGGGTCTACGCTGACGACAAGCCTCACAACATCACCAGCAACACCCAACCTCGTACTGAAATCCGCTTCACTGGGCTAGAC TACACGTCTGGAGTGTGGCAGTTCGAGGGACACGGTTTCGTCCCCAACGGGACGTCGGGGGCCACGATAGCACAGATTCACGGCGCGAGGAATGCGAGCA CTTCGTTGATCGTAAGAATGTACGAGCCGGGAGATATGAGGTACTATAGCTTTCTACCGATTGCTAGCGGCGGGCTTTACGACCGCTGGTTCAGGTTGAA CATCATCCACGACGTTGACGACGGAAAGGTGAGCGTTTACGTTGACGGTGAGAAGAAGTTCGAACATGACGACCAAGGCCCGGGGGACTTATATTTCAAG TGTGGGGTTTACGCAGCTCCCGCCAACATTAGCTATTACATGGAATCTCGATGGAGAGACCTCAAGATTTTTTATAAGAAAACAAACCTGATGTGA
AA sequence Show only first row Show all	>Lus10028109 pacid=23166568 polypeptide=Lus10028109 locus=Lus10028109.g ID=Lus10028109.BGIv1.0 annot-version=v1.0 MELGRLSHNSVLLLLMVIIFKSTLLSPVCAAVASDPTDGFTEIPLNETNLVLQKPYNIPLDQRYSFVNGTHRMWVYADDKPHNITSNTQPRTEIRFTGLD YTSGVWQFEGHGFVPNGTSGATIAQIHGARNASTSLIVRMYEPGDMRYYSFLPIASGGLYDRWFRLNIIHDVDDGKVSVYVDGEKKFEHDDQGPGDLYFK CGVYAAPANISYYMESRWRDLKIFYKKTNLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028109 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	2.2	0.8556
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	2.4	0.9005
					Lus10024480 [exp]	4.0	0.8591
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	4.0	0.7891
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012414 [exp]	5.2	0.8229
					Lus10042413 [exp]	7.3	0.7347
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	7.9	0.8700
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	10.4	0.8712
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	11.0	0.7501
					Lus10004769 [exp]	11.2	0.7983

Compare expression of checked genes

Lus10028109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.