Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028571 [exp] 231 / 4e-77 ND / Lus10028109 [exp] 224 / 8e-74 ND / Lus10018877 [exp] 223 / 8e-74 ND / Lus10042813 [exp] 219 / 2e-70 ND / Lus10028570 [exp] 215 / 2e-70 ND / Lus10042472 [exp] 211 / 3e-69 ND / Lus10029786 [exp] 211 / 7e-69 ND / Lus10026194 [exp] 202 / 9e-66 ND / Lus10042473 [exp] 206 / 1e-65 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193200 [exp] 227 / 2e-75 ND / Potri.002G067000 [exp] 218 / 1e-71 ND / Potri.001G307100 [exp] 213 / 5e-70 ND / Potri.001G306932 [exp] 213 / 9e-70 ND / Potri.019G002400 [exp] 207 / 2e-67 ND / Potri.001G307000 [exp] 200 / 1e-64 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10028110 pacid=23166494 polypeptide=Lus10028110 locus=Lus10028110.g ID=Lus10028110.BGIv1.0 annot-version=v1.0 ATGGTACTGTCTCCTGCAGCGATGATATTGCTCTGGTGTCTGTCCCTGTATGTGGTTGATGTTGCAGCAAACACGACGTCGTATTCAGCGGCAGGTGCGG GGACAGCGGATCCAACTCGTGGGTTCAAACAAGTTGAACTGAAGGAAGGGAATTTCAAGCTACAGAAACCGTACGACGTCCCTCTGGAGAAGCGGTATAG CTTCAAAGACGGAGTCCATAAGCTGTGGGTGTATGACGACGATAAGCCTTTCAAACCCCATAGCACTACCCTCCCCCGCACCGAAATCCGGATCAAGGGG CTGGATTATTCGTCGGGAGTGTGGCAATTCGAAGGGCACGCCTACGTACCGAAGGGATCACATGGAGTGACCATATTCCAAATCCACGGAGGGAGAACTA TAAGCACACTGACATTGCAGCTGAGGGTCATCAACGACGATCTATGGTACTTCTGGAAGAAGCCCATCGTCCCGAACATCGTGGGGAAATGGTTCAGGCT GAATGTTATCCACGACATCAACAAAGGGAAGTTGTCTGTGATCGTCGACGGCGAGCTGAAAATTGAGGGCAAAGACGGAGGGAAGGGTGCTTGTTACTTC AAGTGTGGGGTCTATGCTTGTCGCAAGGGAGGTAGCCATTATATGGAATCCAGGTGGAAGGACATCAAAGTTTTCAAAAAGTGA
AA sequence Show only first row Show all	>Lus10028110 pacid=23166494 polypeptide=Lus10028110 locus=Lus10028110.g ID=Lus10028110.BGIv1.0 annot-version=v1.0 MVLSPAAMILLWCLSLYVVDVAANTTSYSAAGAGTADPTRGFKQVELKEGNFKLQKPYDVPLEKRYSFKDGVHKLWVYDDDKPFKPHSTTLPRTEIRIKG LDYSSGVWQFEGHAYVPKGSHGVTIFQIHGGRTISTLTLQLRVINDDLWYFWKKPIVPNIVGKWFRLNVIHDINKGKLSVIVDGELKIEGKDGGKGACYF KCGVYACRKGGSHYMESRWKDIKVFKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028110 [exp]	0	1
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017056 [exp]	1.4	0.9121
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	2.2	0.9176
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	5.2	0.8980
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	9.9	0.8369
AT3G16210			F-box family protein (.1)		Lus10031512 [exp]	10.0	0.7969
					Lus10006809 [exp]	19.0	0.8494
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	19.4	0.8594
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	27.2	0.8314
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	27.6	0.8692
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10021376 [exp]	27.9	0.8353

Compare expression of checked genes

Lus10028110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.