Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43580 516 / 0 Sphingomyelin synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042814 [exp] 738 / 0 AT1G43580 585 / 0.0 Sphingomyelin synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193300 [exp] 593 / 0 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1) Potri.002G066900 [exp] 581 / 0 AT1G43580 575 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028111 pacid=23166473 polypeptide=Lus10028111 locus=Lus10028111.g ID=Lus10028111.BGIv1.0 annot-version=v1.0 ATGAGGCGGTGGCGGGCGGCATTAGGATCCCCCAGCGGCTTAGGATTCGCTGCTATCTCCTATGTAGCAGTAGACTACCTTCGCCATCTTTCCCCAACCT GGCACGAGAGGCTGCAGCCCATTCTCTGGTCTCTGCTTGCTGTAATCGCAGTCTCTCGGGTCCCCTTCTACAAACACTGGTCCGCTGAGTTTCGCGCTCT CATTCCTTTCCTAGGCTCCTTGCTCTTTCTGCTCGCTTGTCTTCTCCTCGAAGCTATCTCCGTCCGTTCTGTCACCGCCGTTCTCGGCCCCGATTGGCAC CGTGATACGCCTCCTCTTCCTGATCCTGGTCAGTGGTTCCTTCTCTGGTTGAACGAGAAACTCCCTGAACCAATTGTTGAGATACTGAGGGCTAGAATCG TTGGCCTGCACCATTACCTGATGTTGTTTATAATGCTAGGATTCTCTGTACTGTTTGGTTCTTTACAAGCTCCTGGCTTTGGGCTGGGAGCCAGGTACAT CTTCACCATGGCGATTGGCCGTATTCTTCGTACTATAACGTTTGTATCCACGATTCTGCCGTCAGCTCGGCCCTGGTGCGCTGGAGGACGGTTTCAAGTT CCCACATACCCGCATCCATGGGCTCAGAAATACTATGTTCCTTATGCTTCAGATTCTAATGCTATACGCCAGATACTGCAATCTGACTGGGCTTATGCTG AGACGGAGGAATATCCTTCTGACTACCAGCCAGATTGGGGGGAAATGAGCTTCCTAGTAGATTTCTTGCGACCAATTCATGCAGAAAAATCAACATGGTA TAATCTACTGACAAAAGCCGGAGGCGGTTGCAATGACCTAATCTACAGTGGTCACATGTTTGTTGCTGTTCTAACAGCCATGGCTTGGACAGAAGCTTAT GGAGGTTTCACCTCGGCTTTCATATGGCTACTTGTACTACACAGCGCACAACGAGAAGTACGAGAACGTCACCACTATGCAGTGGACTGTGTGGTGGCAA TATATGTAGGCATCCTTCTCTGGAAGACGACTGGTTTCATGTGGCCAGGTGCGAAAAGTGGCACAAGGAGGCTGAAGAAGCTGGAGAAGATGGAACTCAA GTTGGTGCAAGCTGCGAAAGACTCGGACATGGAGAAGGTGAGGGAGCTTCTGAATGAGGTTGAGGAAGAGGATGAAGTGCAGAAGAAGAAAGGGTCGAGC AGGTTGATGATGGTGTTTTCTTGGGTGACTGCTTTCTCAATTCTCACAGTTGTGTTTTTGGCCTTCATTTGGACCAGTGATGGTTGA
AA sequence Show only first row Show all	>Lus10028111 pacid=23166473 polypeptide=Lus10028111 locus=Lus10028111.g ID=Lus10028111.BGIv1.0 annot-version=v1.0 MRRWRAALGSPSGLGFAAISYVAVDYLRHLSPTWHERLQPILWSLLAVIAVSRVPFYKHWSAEFRALIPFLGSLLFLLACLLLEAISVRSVTAVLGPDWH RDTPPLPDPGQWFLLWLNEKLPEPIVEILRARIVGLHHYLMLFIMLGFSVLFGSLQAPGFGLGARYIFTMAIGRILRTITFVSTILPSARPWCAGGRFQV PTYPHPWAQKYYVPYASDSNAIRQILQSDWAYAETEEYPSDYQPDWGEMSFLVDFLRPIHAEKSTWYNLLTKAGGGCNDLIYSGHMFVAVLTAMAWTEAY GGFTSAFIWLLVLHSAQREVRERHHYAVDCVVAIYVGILLWKTTGFMWPGAKSGTRRLKKLEKMELKLVQAAKDSDMEKVRELLNEVEEEDEVQKKKGSS RLMMVFSWVTAFSILTVVFLAFIWTSDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43580			Sphingomyelin synthetase famil...		Lus10028111 [exp]	0	1
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015130 [exp]	5.8	0.8328
AT1G80700			unknown protein		Lus10026096 [exp]	9.3	0.8291
AT5G44710			unknown protein		Lus10038399 [exp]	10.7	0.8616
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	11.7	0.8789
AT3G04310			unknown protein		Lus10004401 [exp]	15.0	0.8559
AT2G41945			unknown protein		Lus10021080 [exp]	15.9	0.8672
AT2G02410			unknown protein		Lus10042400 [exp]	19.4	0.8295
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10004992 [exp]	20.5	0.8632
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10039791 [exp]	23.2	0.8539
					Lus10011266 [exp]	24.1	0.8647

Compare expression of checked genes

Lus10028111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.