Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76740 77 / 8e-15 unknown protein AT5G17160 50 / 2e-06 unknown protein AT3G59430 48 / 9e-06 unknown protein AT3G03130 47 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038036 [exp] 51 / 1e-06 AT5G17160 95 / 3e-20 unknown protein Lus10009977 [exp] 49 / 8e-06 AT3G03130 94 / 3e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194350 [exp] 104 / 1e-23 AT1G76740 62 / 6e-09 unknown protein Potri.002G066450 [exp] 100 / 2e-22 AT1G76740 64 / 1e-09 unknown protein Potri.013G081600 [exp] 52 / 4e-07 AT3G03130 131 / 4e-32 unknown protein Potri.019G046801 [exp] 51 / 1e-06 AT3G03130 86 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028114 pacid=23166566 polypeptide=Lus10028114 locus=Lus10028114.g ID=Lus10028114.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCTGAGATGGATTTTCACGGCATGAAGAGGAAGCAGCTTCAAGCTCTATGCAAGAAGCACGGCATTCCGGCGAATAAGACTAACCGGGAGC TTGCCGATCGATTGGCTTCAGCTCTTAAGATGAACGAAGCTCCCTGCTCACAGAAGATCGACGAAGGAGAAACAGTGGAGGAGGACGATAGTGAAGCTCT CCACCAACCAAAGCGAGTGAGGTTTAGTCCCGAGATAGAAACGCGTGAATATGAGCCTACAGCTCGTAAGCAGAGGGGGAGAGTTACTAGGTCAAGGGCT AAGTTCAAAGAGACTAGCACTGAAGATGAGACCTCCAAGAATCAAGAAAAGGAAGGGCTTCCAATGAAATCTCCTCGGACGTTGAGGAATGAAAGGAGGA GAAAGCTCGTGCAGGAATGTGTTGTACCTGAAGAGCTACGGACACGAGCAAAAAGAAATACGCCCAAGAGCAAAGAATCTGAACCCATGATAAGTGAAGG ATCTGATTTATGTGAAGTTGGTGGCAGAATCACAAGGCTTAGAGAGAGAACGCAGTCCACTTCTAATAATACTTCAGCAGTCAACAAAGGAGCCATGTCT GATGTGCCCCAGAAAGATTGTAGTGAGGTCATTGTTGCCAAGGAAAGTGCGGATGGCGCAAACAGATACCCCTCTCGACGGAAATCTGTAGTGGTGGGTC AGCCCAGAAACTCTAATTCCGAAGTGAAGATGGTTGCTGAGGCTTCAGCAGACCTTAAAGGAGATAATTTCCAGAAGACTTTAGGACCGGCTGGAAATAT GAGAAGGTACAGGCGGAAGAATGTGGTTTTCGATACTATTGCTGCGGTTGATCAAGTGGGAGAAGATGAATCAGTAGGGTTGGAAGAGATCCCAGAGGAA GTGAAGAGAAACTCCTCCACGCAAAAATCAAGGATTCTACGGAAGGGAAAGTTCGAAGTTGCCAATAAAGGACGGAAAGGAAAAGCTAGTAAGGTGTCAA GTAACTCCGAACTGGAAGTAATTAAGGACGTTGAACCCTCTGTTGACCCCGAAGGTGATGATGACGCCCAGAAAATATGTGCACCCATTGGAAATCTCAG AAGGTCTAGGCGGAAGAATATTGCGGTCTCACTGTCAGGCGCAAATACCGCCACTGATGAAGCGGATATTGAAGGCGAGGCTGGTGGGTTGAAGTGGAAG GCAAAGTTATCAAGGGGAATTTCTCTGGCCGGAGAGGAAACAATCTAA
AA sequence Show only first row Show all	>Lus10028114 pacid=23166566 polypeptide=Lus10028114 locus=Lus10028114.g ID=Lus10028114.BGIv1.0 annot-version=v1.0 MAEAEMDFHGMKRKQLQALCKKHGIPANKTNRELADRLASALKMNEAPCSQKIDEGETVEEDDSEALHQPKRVRFSPEIETREYEPTARKQRGRVTRSRA KFKETSTEDETSKNQEKEGLPMKSPRTLRNERRRKLVQECVVPEELRTRAKRNTPKSKESEPMISEGSDLCEVGGRITRLRERTQSTSNNTSAVNKGAMS DVPQKDCSEVIVAKESADGANRYPSRRKSVVVGQPRNSNSEVKMVAEASADLKGDNFQKTLGPAGNMRRYRRKNVVFDTIAAVDQVGEDESVGLEEIPEE VKRNSSTQKSRILRKGKFEVANKGRKGKASKVSSNSELEVIKDVEPSVDPEGDDDAQKICAPIGNLRRSRRKNIAVSLSGANTATDEADIEGEAGGLKWK AKLSRGISLAGEETI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76740			unknown protein		Lus10028114 [exp]	0	1
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	1.0	0.9797
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	3.2	0.9537
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	5.3	0.9470
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027934 [exp]	5.5	0.9516
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	7.7	0.9442
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	7.7	0.9420
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	9.2	0.9333
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	10.6	0.9410
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	12.3	0.9402
					Lus10039387 [exp]	14.5	0.9116

Compare expression of checked genes

Lus10028114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.