Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30270 786 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 659 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 618 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 609 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G35410 541 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 518 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G45820 498 / 2e-175 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 468 / 3e-163 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT4G18700 467 / 3e-162 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G10930 465 / 3e-162 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042816 [exp] 891 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 630 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 624 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 561 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 545 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 510 / 6e-180 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021488 [exp] 496 / 2e-175 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10021852 [exp] 491 / 1e-172 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 491 / 2e-172 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062800 [exp] 806 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 795 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 648 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 639 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.001G222600 [exp] 638 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 635 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G130500 [exp] 536 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 521 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.011G067500 [exp] 511 / 3e-180 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 495 / 3e-174 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028115 pacid=23166399 polypeptide=Lus10028115 locus=Lus10028115.g ID=Lus10028115.BGIv1.0 annot-version=v1.0 ATGGCGACTCGGGGGCACGGTGGGAGTGGCAGCAGGACGCGCGTTGGGAGGTACGAGCTTGGAAGGACTCTTGGGGAAGGAACCTTCGCTAAGGTGAAGT ACGCCAGGAATATCGAGACTGGGGAGAACGTTGCTATCAAGATTCTTGATAAAGACAAAGTCCTCAAGCATAAGATGATCTCTCAGATTAAGAGAGAAAT ATCGACAATGAAGCTTATTCGGCACCCAAATGTCATCCGTATGTTTGAGGTGATGGCAAGTAAAACCAGAATATACATTGTGATGGAATTCGTGACTGGT GGTGAACTTTTTGACAAAATCGCTAGTAAAGGAAGGCTGAAAGAAGATGAAGCGAGGAAGTATTTTCAGCAGCTTATAAATGCTGTCGATTATTGCCACA GTAGAGGTGTTTACCATAGAGACCTAAAGCCTGAGAATCTGCTGCTAGATACTTCTGGATCACTTAAAGTGTCAGATTTTGGATTGAGTGCATTACCTCA GCAAGTTCGTGAGGATGGGTTACTTCACACAACATGTGGCACCCCAAATTATGTTGCTCCTGAGGTAATCAACAATAAAGGCTATGATGGAGCCAAGGCA GATTTATGGTCTTGTGGTGTGATTCTCTTTGTCTTGATGGCTGGGTACTTGCCTTTTGAGGATTCAAACCTTGTGCAATTGTACAAAAAGATTTTTAAAG CCGAGTTCTCATGTCCTCCTTGGTTCTCCACTAGTGCAAAGAAATTAATCAAAAGAATATTGGATCCCAATCCAGCTACTCGGATCCCTATTGCTGAGGT TATTGAAAACGAGTGGTTCAAGAAAGGGTATAAACCACCAGTTTTTGAAAATGCTGATGTTAGTCTCGATGATGTGGATTCCATCTTCAATGATTCAGCG GACTCTAGGAATCTTGTTGTGGAAAGGAGGGAAGATGGGCCCATCGGTCCTGTGGCTCCTGTGACCATGAATGCTTTTGAATTGATCTCTACTTCTCAGG GTCTCAATCTCAGTAGCTTGTTCGAGAAGCAGATGGGACTTGTTAAACGTGAAACTAGATTCGCGTCGAAAAGGTCTGCCAATGAGATAATGTCACAAAT TGAAGCAACAGCAATGCCTTTGGGTTTCGGTGTGAAGAAGAATAACTTCAAGATGAAGCTTCAGGGAGAGAAGACAGGGCGTAAAGGGCATCTGTCAATT GCAACTGAAATATTTGAGGTCGCTCCTTCTCTTTACATGGTTGAGCTTCGGAAGTCTGGTGGCGATACCCTTGAATTCCACAAGTTTTACAATAGCCTGT CGACGGGACTGAAGGATATTGTTTGGAAGACGGTGGATGAAGAAAAGGAGGAATAG
AA sequence Show only first row Show all	>Lus10028115 pacid=23166399 polypeptide=Lus10028115 locus=Lus10028115.g ID=Lus10028115.BGIv1.0 annot-version=v1.0 MATRGHGGSGSRTRVGRYELGRTLGEGTFAKVKYARNIETGENVAIKILDKDKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKTRIYIVMEFVTG GELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDTSGSLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKA DLWSCGVILFVLMAGYLPFEDSNLVQLYKKIFKAEFSCPPWFSTSAKKLIKRILDPNPATRIPIAEVIENEWFKKGYKPPVFENADVSLDDVDSIFNDSA DSRNLVVERREDGPIGPVAPVTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFASKRSANEIMSQIEATAMPLGFGVKKNNFKMKLQGEKTGRKGHLSI ATEIFEVAPSLYMVELRKSGGDTLEFHKFYNSLSTGLKDIVWKTVDEEKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	0	1
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	3.5	0.9322
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	5.7	0.8665
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	6.0	0.8904
AT3G09760			RING/U-box superfamily protein...		Lus10019931 [exp]	6.9	0.8954
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	8.7	0.8609
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	8.8	0.8729
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	10.0	0.8350
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	11.3	0.8986
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	11.7	0.8664
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	13.3	0.8214

Compare expression of checked genes

Lus10028115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.