Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15850 697 / 0 ATRH1 RNA helicase 1 (.1) AT5G60990 181 / 5e-51 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 164 / 3e-43 DEA(D/H)-box RNA helicase family protein (.1) AT5G26742 153 / 1e-39 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT2G33730 145 / 5e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G22310 142 / 2e-36 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G22330 140 / 2e-35 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT1G16280 137 / 7e-35 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G14610 138 / 1e-34 DEAD box RNA helicase family protein (.1.2) AT3G18600 136 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042818 [exp] 519 / 0 AT4G15850 369 / 4e-124 RNA helicase 1 (.1) Lus10031182 [exp] 197 / 2e-57 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 197 / 4e-57 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 152 / 3e-39 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10001057 [exp] 150 / 1e-38 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10027268 [exp] 147 / 7e-38 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10038975 [exp] 146 / 2e-37 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 144 / 1e-36 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 142 / 3e-36 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158000 [exp] 816 / 0 AT4G15850 740 / 0.0 RNA helicase 1 (.1) Potri.006G249100 [exp] 203 / 1e-59 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 195 / 3e-56 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 171 / 9e-48 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 151 / 6e-39 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G000500 [exp] 150 / 1e-38 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.012G131000 [exp] 147 / 1e-37 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 145 / 4e-37 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.005G000100 [exp] 145 / 5e-37 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.016G023100 [exp] 140 / 1e-35 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10028117 pacid=23166417 polypeptide=Lus10028117 locus=Lus10028117.g ID=Lus10028117.BGIv1.0 annot-version=v1.0 ATGGGGGAACCGAGAGATGGCAACGTTCCAGTTCTGCCATGGATGAGGCAACCAGTTGATGTCACTCAATTTGAAGAATGCCCAGTCGATCTTCTGCCTT GCCTTGATCACAGGCTTAAGGATGCGTTGCAGAAAATCGGATTCTCATCAATCTTCCCCATACAAGTTGCCGTCTGGCAGGAGACAATCGGTCCTGGCGC TTTCGAGCGAGATTTGTGCATAAACTCGCCTACAGGCAGTGGTAAAACTTTGGCCTACGCTTTACCAATCGTGCAAGCATTGTCGACCCGCACGGTTAAA TGTTTGCGCGCTTTGGTGGTCTTGCCCACACGTGATTTAGCCTTGCAGGTGAAGGAGGTGTTTGCTGCAATTGCACCGGCTGTAGGCTTATCTGTTGGTC TTGCTGTGGGGCAATCCTCAGTTGCAGATGAAATTTCCAATCTTATAAAGCGACCCAAGCTTGAGGCGGGCATTTGCTATGATCCGAATGATCTTCCTGT CGAGTTACAAAGTTCGGTTGATATATTGGTGGCAACCCCTGGGAGGCTAGTGGACCACATTACATCGACCAAGGGATTTACTTTAGAGCATCTCTGCTAT CTAGTGGTTGATGAAACAGATAGAATGCTCAGGGAGTCTTACCAGTCTTGGCTTTCCACCGTTCTTACTCAATCACAGTCTGCTCAAGAAATCTATGTGC CATGTATTAATACTGTTCTTCCAATGGCATTTGGTCCTTTGAAAACCATAAGAAGATGTGGGGTTGAGAAAGGATTTAAGGGAAAACCTTATCCTAGGCT TGTGAAGATGGTTTTATCAGCCACATTAACCCGAGATCCTAGCAAGCTTGCTCAACTTCATCTGCACCATCCTTTGCTAGTGACAACTGGGAATAAGCGC TATCAGCTTCCGGAAAAATTAGAATCCTACACTTTGGTATGCGAATCGCAGCTGAAACCCTTGTACTTGGTTGCTATTCTACAAACTTTAGGAAAAGAGA AATGCATTGTTTTCACATCATCAGTGGAATCTACGCATAGGCTTTGCACCCTCATGAATTTTTTTGACGATGTGAAGCTTAATATCAAGGAGTATTCTGG TCTTCAACGCCAATCTGTGAGAAGCGAGACTTTGAATGCATTCCGAGAAGGGAAGATACAGGTGCTTGTTTCCTCTGATGCAATGACTCGTGGAATGGAT GTTGAAGGGGTGAGGCATGTTGTCAATTATGACATGCCTTCATATATTAAGACCTACATACATAGGGCTGGTAGGACAGCAAGAGCTGGTCAAACGGGGC GATGCGTTACATTGTTGAATGAATTTGAGGTCAAGCGCTTCAATAGAATCTTACAGAAAGCTGACATCAAATCTTGTCCTACCTACTCCGTACCTTCTGG CTCTATCGAGGCACTTCAAGCAATTTATCAGTCAGCACTTGGGAAGCTAAAGGAGAAAGTTGAATCAGAAACTCACAAGAAGCGCAAATTTGCCCCAAAA TATTCCAGAAGAATCCAATCAGAGCGACCAAACAAAAACAAGGATTGA
AA sequence Show only first row Show all	>Lus10028117 pacid=23166417 polypeptide=Lus10028117 locus=Lus10028117.g ID=Lus10028117.BGIv1.0 annot-version=v1.0 MGEPRDGNVPVLPWMRQPVDVTQFEECPVDLLPCLDHRLKDALQKIGFSSIFPIQVAVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQALSTRTVK CLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGLAVGQSSVADEISNLIKRPKLEAGICYDPNDLPVELQSSVDILVATPGRLVDHITSTKGFTLEHLCY LVVDETDRMLRESYQSWLSTVLTQSQSAQEIYVPCINTVLPMAFGPLKTIRRCGVEKGFKGKPYPRLVKMVLSATLTRDPSKLAQLHLHHPLLVTTGNKR YQLPEKLESYTLVCESQLKPLYLVAILQTLGKEKCIVFTSSVESTHRLCTLMNFFDDVKLNIKEYSGLQRQSVRSETLNAFREGKIQVLVSSDAMTRGMD VEGVRHVVNYDMPSYIKTYIHRAGRTARAGQTGRCVTLLNEFEVKRFNRILQKADIKSCPTYSVPSGSIEALQAIYQSALGKLKEKVESETHKKRKFAPK YSRRIQSERPNKNKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	3.2	0.8493
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	4.9	0.8737
AT4G32910			unknown protein		Lus10011625 [exp]	8.5	0.8325
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	9.2	0.8458
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	10.2	0.8463
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	13.3	0.8283
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	13.4	0.8339
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	13.7	0.8233
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	19.6	0.8151
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	28.8	0.7591

Compare expression of checked genes

Lus10028117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.