Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30220 871 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 650 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 622 / 0 ATINT3 nositol transporter 3 (.1) AT2G43330 387 / 6e-129 ATINT1 inositol transporter 1 (.1) AT4G36670 188 / 6e-53 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G18830 187 / 4e-52 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 183 / 1e-50 AtPLT4 Major facilitator superfamily protein (.1) AT1G07340 179 / 2e-49 ATSTP2 sugar transporter 2 (.1) AT5G16150 177 / 1e-48 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G18480 176 / 1e-48 AtPLT3 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042820 [exp] 1134 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017561 [exp] 654 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 654 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 640 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 624 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 618 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 587 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10025565 [exp] 416 / 5e-140 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 399 / 1e-133 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010600 [exp] 661 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 656 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 653 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 400 / 4e-134 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 391 / 3e-130 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133420 [exp] 365 / 2e-124 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133340 [exp] 355 / 9e-120 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.013G135200 [exp] 199 / 7e-57 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 195 / 5e-55 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 189 / 7e-53 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10028118 pacid=23166502 polypeptide=Lus10028118 locus=Lus10028118.g ID=Lus10028118.BGIv1.0 annot-version=v1.0 ATGGAGGGAGTGCACGCAGCGCCACCGGATTCATCGGCTTTCAAAGAATGCTTCGCCCTCACTTGGAAGAACCCTTATGTTCTCCGCCTCGCTTTCTCTG CCGGAATTGGCGGCCTTCTCTTCGGTTACGACACCGGAGTCATATCCGGAGCTCTTCTCTACATCAGAGACGACTTCAAGTCCGTCGACAGACAGACCGT TCTTCAGGAGAGCATAGTGAGCATGGCAGTGGCAGGAGCAATTATAGGTGCTGCAATTGGTGGATGGGCAAACGATAAGTATGGAAGGAAAAGTGCACTT ATGGCTGCTGATTTCCTCTTCTTCATTGGAGCTATAATCATGGCCGCCTCCCCTGGCCCCGCTACCCTCATTGTCGGTCGAGTCTTCGTAGGTCTTGGAG TCGGGATGGCTTCAATGACATCCCCTCTCTACATCTCGGAGGCATCTCCGGCCAAAATTCGAGGCGCTCTCGTCAGTACAAACAACTTCCTCATCACCGG CGGCCAATTCCTGTCTTACCTAATCAACTTGGCCTTCACCAAGGTTCCAGGAACATGGAGGTGGATGCTTGGTGTTGCAGGAATTCCAGCTCTAGTACAG TTTGCCCTCATGATGTTCCTTCCAGAATCCCCCCGTTGGCTTTTCCGCAAGGGCAAAGAAGAAGAAGCCAAGACCATCCTGAGAAGAATATTCCCAGCGG AAGATGTCGAAGCTGAAATCCAAGACCTGAAGGACTCAGTAGACAAGGAAATCCGCGAACAGGGAAGTTCAGAGAAGATAAATTTCAGAAAACTGTGGCA AACAAAGACAGTCAGAAGAGGACTTATAGCCGGTGTCGGGTTACAGGTTTTCCAGCAGTTCGTTGGGATCAACACGGTCATGTACTACAGTCCAACGATA GTTCAGTTAGCGGGTTTCGCATCAAACCAGACCGCATTGCTTCTTTCCCTCGTCACAGCCGGACTCAATGCCCTTGGATCCATTGTCAGCATTTACTTCA TTGACAGGACTGGAAGGAAGAAGCTCCTGTTGATTAGCTTGTTTGGTGTGGCGGTTTCGCTCGGTTTGTTGGCTGGAATTTTCCATCAGACCACTACTCA CTCTCCCATGGTCACTGTTGCGACCGGCCCCAAATATTCGAACATGACCTGCCCGGACTACACTTCGGCGGCGAACTCAGGTTCCTGGGACTGTATGAAG TGCCTCAAGGCTTCTCATCCAGATTGCGGCTTCTGCTCTTCAGCTTCCGACAAGTTACTCCCCGGAGTATGTTTGATGTCGAACGACGATGTGAAAGATC TTTGCCACGGAGACAAAAGGGAATGGTACACGAGAGGATGCCCGAGCAAATTCGGTTGGCTAGCACTGATAGGCCTAGCTTTGTACATTATCTCGTTCTC CCCCGGAATGGGTACAGCTCCATGGATTGTTAACTCAGAGATATACCCTTTAAGATTTCGAGGAGTCTGCGGAGGAATAGCAGCCACTGCTAACTGGATA TCAAACCTCATCGTGGCACAAACTTTCCTCTCGCTCACCGAAGCTATCGGAACCGATATGACTTTCTTATTGTTCGGAATCGTGTCGGTGATTGGTTTCT TCTTTGTCATAATATATGTACCTGAAACCAAGGGACTCCCCATTGAAGAAGTAGAGAAGATGTTGGAGATGAGGCCTCTTCAGTACAAGTTCTGGGAGAA GAAGAGACCTGCAGCAGAAGAAACAGATGACAAATTAGAGAAGAAGCAAGGTGTGTGA
AA sequence Show only first row Show all	>Lus10028118 pacid=23166502 polypeptide=Lus10028118 locus=Lus10028118.g ID=Lus10028118.BGIv1.0 annot-version=v1.0 MEGVHAAPPDSSAFKECFALTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRQTVLQESIVSMAVAGAIIGAAIGGWANDKYGRKSAL MAADFLFFIGAIIMAASPGPATLIVGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNNFLITGGQFLSYLINLAFTKVPGTWRWMLGVAGIPALVQ FALMMFLPESPRWLFRKGKEEEAKTILRRIFPAEDVEAEIQDLKDSVDKEIREQGSSEKINFRKLWQTKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI VQLAGFASNQTALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLLISLFGVAVSLGLLAGIFHQTTTHSPMVTVATGPKYSNMTCPDYTSAANSGSWDCMK CLKASHPDCGFCSSASDKLLPGVCLMSNDDVKDLCHGDKREWYTRGCPSKFGWLALIGLALYIISFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI SNLIVAQTFLSLTEAIGTDMTFLLFGIVSVIGFFFVIIYVPETKGLPIEEVEKMLEMRPLQYKFWEKKRPAAEETDDKLEKKQGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	0	1
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	2.2	0.6944
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	11.8	0.6760
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	14.7	0.6637
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	18.7	0.6643
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	22.8	0.6691
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	25.9	0.6330
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	27.4	0.6630
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	28.3	0.6628
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	30.3	0.6537
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	43.1	0.6333

Compare expression of checked genes

Lus10028118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.