Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30130 323 / 3e-104 unknown protein AT2G26710 307 / 3e-95 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G46960 301 / 4e-93 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14610 290 / 5e-89 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14630 288 / 3e-88 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G46950 290 / 4e-88 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 288 / 5e-88 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 288 / 6e-88 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT4G27710 286 / 2e-87 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14650 284 / 2e-86 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026084 [exp] 756 / 0 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 749 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10017775 [exp] 726 / 0 AT3G14630 359 / 2e-117 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10002311 [exp] 601 / 0 AT3G14630 317 / 8e-104 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019184 [exp] 481 / 5e-162 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10002108 [exp] 427 / 2e-141 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036822 [exp] 428 / 3e-140 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10004633 [exp] 421 / 6e-139 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 421 / 8e-139 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 484 / 2e-163 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 474 / 1e-159 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 474 / 2e-159 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 452 / 9e-151 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 434 / 7e-144 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 431 / 1e-142 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139500 [exp] 409 / 5e-135 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G084000 [exp] 361 / 1e-118 AT1G30130 370 / 5e-129 unknown protein Potri.011G098800 [exp] 333 / 4e-105 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 326 / 2e-102 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03352 [flax] [poplar] Adenine_glyco Methyladenine glycosylase PF00067 [flax] [poplar] p450 Cytochrome P450 PF07103 [flax] [poplar] DUF1365 Protein of unknown function (DUF1365)
Representative CDS sequence Show only first row Show all	>Lus10028119 pacid=23166451 polypeptide=Lus10028119 locus=Lus10028119.g ID=Lus10028119.BGIv1.0 annot-version=v1.0 ATGGAACTCATCTACCTTCTCCTCTCAATTATCTCCACGTGCCTCACTTCCCTCTTCCACTCTATCCGCCGCCTCTTTGTCTCTCCCGCTGCCAGCCACT CCCACGGCGTTTCTTTCTACCAGGGCACTGTATGGCACCAGCGCCGCCGCCCCGTTCACCACTCATTCCGCTATCCTGTCCGTTACGCGCTCTTCGACCT TGACCACGCACTTCACCTCCCGCCGGACCACCTCTCCGCCGATGAAGCTCGTCAGGCAGCTAATACTGCCGGACCAGTTTTTCTGCTAACAATGCCTCCC AGCCTTGGGTATGAACAGAATCCATTAAGCTTATATTACTGCTACGATGGAGATGCTTCTGATCCTACTTTGACCAAATGTGTTGCAGAGGTAACAAATA CACCTTGGGGTGAAAGAGTTGCATTTGTCTTCAATCCTAACTCTGATTGTGTGGCTAAACCTTTGCATGTCAGTCCTTTTATGGATATGATGGGGAATTG GAAAATCAAAGCAAGTGCTCCAGGGGAGAATTTGACGGTCTTCATTTCAGTTCAACACCCCGATCATGGAGATTACTTCATCGCCACGTTGGACGCCAAG AAAACTACAGTTTCAGATAGTGATTCTTTCTTTTGGTTGATGCCTCACAAAGTTGCAGTCTGGATATATTGGCACGCTTTGCTGCTGTGGTGGAAGAATG TGAAGTTCATACAGCATCCGAGGTATAATGTTCCCAACTACAGGGAGGAAGCTGTGATGCGGAATGAAAAACATCTTCAATGCGGTGAATCAGTTTCATC TGGATGTTTGCAAACTCAAGCACCGGCTTGCACTGCTGCTCGTTATTTGAAATGGAGGGATGCTAAGTGGCCATGGTCTGAGTCTACTACCTGCACGGCT GCATCATTCGAACTGCCAAGTCTGTCTGGAGCTCTGGCAGAACTAGCATGGCCTGCCATTCTTGATAAACGACAGATGTTTAGAGAAATCTTTCTAGATT TCAACCCAGTGGTTGTGTCGAAGCTGAACGAGAAGGAGTTTGTCATGGTCGGTTTGGACCTCACCGGACGGCAGCCGGCCACGGTAAAGCCAATCCTGCT TCAACGCTGTCTGAATTCCCTCGGAATCAGAGGCCCATCCTACAGATTCTTCTACGGAAACACTCTGGAAATTCAGAAGCTAAGAAAAGCCGCCATGGAA AAACCTGTGTCAGGTCTTTTTCATCAAATTCATTACAGGTTGCAGCCTCAGTTGTCCGCCTGTTCTAACACATACGGCCCGGATTTCATGTTCTGGATCG GCAGCCGCCCTTTCTTGACTGTGTCGGAACCGGAGATGGTGAAGCAAGTCGCGAATGATCGAGACAAAGCTTACAGGAAAGTACTACCAAGAGGTATCGC GAAGCAGATGCTCGGAGATGGACTGGTCACGTCGGAGGGTGAAAAATGGGCCAAGATGAGGAAGCTCGCTAATTTCGCCTTCAATATGATTCCGGCAATG ATTGTTAGGACAGACATGATGCTAGAGAGGTGGAAGAGTCATGTAGGGAAAGAGGTTGAGGTGTTTGAAGAATTCAGGTTCTTAACAGCTGAAGTAATTT CCAGGACTACGTTTGGGAGTAGCTACCTTGAAGGAAAGCAGCTCTTTTACAAGTTGAGTAAGCTTACCCAGCTCGGTGTTGCCAGCTTGTTCAAAATTAG GGTTCCTGGAATCAGCAAGATTTACAGAAGCAGTTCTGATATTGAAGCAAACAAGCTTGAGCAAGGAATAAGAGCAGCTAAACATGAAACTGACGAATCA AAGCGCATTACGGTCGATTATGTGGTGGATGAGTGCAAGACGTTCTATCTTGCTGGACAAGAAACAACCAACACTCTGTTGGCATGGGTTATCTTACTTC TTTCTATCCACACAGATTGGCAGGAGAAAGCAAGAGCCGAAGTTCTGAACCAATTCGGGAGCCGAGCTCCTGATGCAGATGGGATTGCAAGGCTCAAGAT TTTGAACCTGATTATCAACGAGACTCTGCGATTGTACCCTCCAGCGAGCGGGGTTTCTCGAGAAGTTGTGAAAGATGTTCAACTGGGGAAGCTGACTCTC CCTGAGAAAACATACATCATCATCGATACAATATCACTTCATCAAGACCCTAAAATTTCGGGAAAGGATGCACATCTTTTTAATCCGGAAAGGTTTTCTG AAGGAGTTGCCAAAGCCACAAAGAATAATCCATCTGCGTATCTTCCGTTTGGGATAGGGGTGAGAGTTTGTGTGGGGTCGAGCTTTTCGGCAAATGAAGC GAAGATTGCACTTTCAATGATCCTTCAGCGTTATACGTTTGCTCTTTCCCCAACTTACATCCACTCTCCCACTCAAATGATAACAACCCGCCCGCAACAT GCCCGCAACATGGAGTTCAGGTCATCCTTCATTGCCCTGCAGTAG
AA sequence Show only first row Show all	>Lus10028119 pacid=23166451 polypeptide=Lus10028119 locus=Lus10028119.g ID=Lus10028119.BGIv1.0 annot-version=v1.0 MELIYLLLSIISTCLTSLFHSIRRLFVSPAASHSHGVSFYQGTVWHQRRRPVHHSFRYPVRYALFDLDHALHLPPDHLSADEARQAANTAGPVFLLTMPP SLGYEQNPLSLYYCYDGDASDPTLTKCVAEVTNTPWGERVAFVFNPNSDCVAKPLHVSPFMDMMGNWKIKASAPGENLTVFISVQHPDHGDYFIATLDAK KTTVSDSDSFFWLMPHKVAVWIYWHALLLWWKNVKFIQHPRYNVPNYREEAVMRNEKHLQCGESVSSGCLQTQAPACTAARYLKWRDAKWPWSESTTCTA ASFELPSLSGALAELAWPAILDKRQMFREIFLDFNPVVVSKLNEKEFVMVGLDLTGRQPATVKPILLQRCLNSLGIRGPSYRFFYGNTLEIQKLRKAAME KPVSGLFHQIHYRLQPQLSACSNTYGPDFMFWIGSRPFLTVSEPEMVKQVANDRDKAYRKVLPRGIAKQMLGDGLVTSEGEKWAKMRKLANFAFNMIPAM IVRTDMMLERWKSHVGKEVEVFEEFRFLTAEVISRTTFGSSYLEGKQLFYKLSKLTQLGVASLFKIRVPGISKIYRSSSDIEANKLEQGIRAAKHETDES KRITVDYVVDECKTFYLAGQETTNTLLAWVILLLSIHTDWQEKARAEVLNQFGSRAPDADGIARLKILNLIINETLRLYPPASGVSREVVKDVQLGKLTL PEKTYIIIDTISLHQDPKISGKDAHLFNPERFSEGVAKATKNNPSAYLPFGIGVRVCVGSSFSANEAKIALSMILQRYTFALSPTYIHSPTQMITTRPQH ARNMEFRSSFIALQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30130			unknown protein		Lus10028119 [exp]	0	1
AT1G28100			unknown protein		Lus10001800 [exp]	2.0	0.7930
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	4.5	0.7489
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037392 [exp]	6.9	0.6543
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	6.9	0.7397
AT3G62370			heme binding (.1)		Lus10011771 [exp]	8.5	0.6592
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	11.7	0.6988
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	16.7	0.6923
AT1G17665			unknown protein		Lus10006153 [exp]	23.9	0.6694
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	24.5	0.6575
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	24.7	0.5985

Compare expression of checked genes

Lus10028119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.