Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18370 263 / 5e-86 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G39830 160 / 3e-45 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 155 / 2e-43 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G27660 78 / 1e-15 Trypsin family protein with PDZ domain (.1) AT1G65630 48 / 6e-06 DEGP3 DegP protease 3 (.1) AT5G36950 47 / 1e-05 DEGP10 DegP protease 10 (.1) AT1G65640 45 / 7e-05 DEGP4 DegP protease 4 (.1) AT5G40560 44 / 9e-05 DEGP13 DegP protease 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042822 [exp] 462 / 8e-164 AT4G18370 329 / 3e-112 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10008781 [exp] 160 / 6e-45 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 157 / 3e-44 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10022234 [exp] 140 / 2e-37 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 80 / 2e-16 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 71 / 2e-13 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10032163 [exp] 45 / 0.0001 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10005931 [exp] 44 / 0.0002 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10014524 [exp] 43 / 0.0003 AT5G40200 843 / 0.0 DegP protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G083300 [exp] 300 / 1e-100 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.004G129200 [exp] 164 / 1e-46 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.001G348800 [exp] 154 / 7e-43 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 82 / 6e-17 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G065600 [exp] 54 / 3e-09 AT4G18370 55 / 1e-10 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10028120 pacid=23166395 polypeptide=Lus10028120 locus=Lus10028120.g ID=Lus10028120.BGIv1.0 annot-version=v1.0 ATGGTGTTGCTAGCCTTGGGTTCCACACACGGAATTCTTCCACAGCCACCGTCTCGACTCCAAGCCACTTATTCCACTTCGCCTTCTCTTCCGAATACAG ACAGCCCATCTCTTCTTGCACGGCGAAGAGCCATCTTCTTCGGTTCCAGTGTTGTAGTCGCAGATTCTTTGCTTGGCTTCTTCAATTCCGTTTCAATCTC CCATGGATCTGCCGTTGCTCGTCAACTCCAACAACAACTAGATGAAGAAGAAGAAGAAGAAGATTATGAAGACGAAGAAGTTGAGCAGGAAGAGAATCGA ACTGTTCGCCTGTTTGAGGTGATTTCTCCATCAATTGTTTCGATCAAGGATATAGAATTATCGAAAATCTCCAGCAGTAGTTCTTCTTCCATGGAAACGA CGAGTGGAGAGGAAGAGAATGCAAAAGTTGAAGGGACAGGCTCTGGATTCATTTGGGATAAATACGGTCACATTGTCACTAATTATCACGTCGTGGCTAA ATTGGCTACGGATATGAGCGGATTACAGCGTTGCAAGATATGCCTTGTTGATGCTCTTGGAAACAGCTTGTATAGGGATGGGACGATTGTCGGGTACGAT CCAAGTTATGATCTTGCAGTACTTAAGGTTGATGTTGAAGGGCATGATGTGAAGCCTGCGGTTGTTGGCAACTCCAATGACTTGCGAGTAGGACAGAGCT GTTATGCCATTGGAAACCCATATGGTTATCAGAACACTCTAACCACAGGGGTAGTTAGTGGCTTAGGAAGGGAAATTCCATCGCCCAATGGAGGCGCCAT TAAAGGAGCCATTCAGACGGATGCAGCTATTAACGCAGGCAATTCAGGTGGAGCGTTGGTTGATTCACATGGACGTGTCATTGGAGTCAACACAGCAACT TTCACTAGAAAAGGCAAGTCATTCGTCTTGTTGGAAAACTTGGTGCATCTTCATCAAATCTCTTTTCTTACTTGTTCTCATTACAGGAACTGGACAGTCA TCTGGAGTCAATTTTGCAATCCCGATCGACACGGTGGTGCGGAATGTGCCAAACCTAATTGTTTATGGAACCCCTTTCGTAGATAG
AA sequence Show only first row Show all	>Lus10028120 pacid=23166395 polypeptide=Lus10028120 locus=Lus10028120.g ID=Lus10028120.BGIv1.0 annot-version=v1.0 MVLLALGSTHGILPQPPSRLQATYSTSPSLPNTDSPSLLARRRAIFFGSSVVVADSLLGFFNSVSISHGSAVARQLQQQLDEEEEEEDYEDEEVEQEENR TVRLFEVISPSIVSIKDIELSKISSSSSSSMETTSGEEENAKVEGTGSGFIWDKYGHIVTNYHVVAKLATDMSGLQRCKICLVDALGNSLYRDGTIVGYD PSYDLAVLKVDVEGHDVKPAVVGNSNDLRVGQSCYAIGNPYGYQNTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGALVDSHGRVIGVNTAT FTRKGKSFVLLENLVHLHQISFLTCSHYRNWTVIWSQFCNPDRHGGAECAKPNCLWNPFRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	0	1
AT4G01995			unknown protein		Lus10012004 [exp]	2.4	0.8400
AT1G63610			unknown protein		Lus10016008 [exp]	2.4	0.8396
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	3.6	0.8498
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	8.4	0.7414
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	9.8	0.8380
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10016734 [exp]	10.2	0.7269
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	17.0	0.8180
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10009703 [exp]	18.3	0.8138
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	20.6	0.8086
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	20.7	0.7353

Compare expression of checked genes

Lus10028120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.