Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30090 583 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 263 / 6e-85 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 145 / 3e-39 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 125 / 3e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G22040 119 / 3e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 102 / 3e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 96 / 7e-22 SKIP4 SKP1 interacting partner 4 (.1) AT5G60570 92 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G21950 88 / 7e-19 SKIP6 SKP1 interacting partner 6 (.1) AT1G16250 86 / 5e-18 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042824 [exp] 816 / 0 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 152 / 1e-41 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 145 / 4e-39 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 117 / 7e-29 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10041299 [exp] 108 / 3e-26 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 108 / 4e-26 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 106 / 3e-25 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 105 / 1e-24 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 104 / 1e-24 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193800 [exp] 673 / 0 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.018G007100 [exp] 283 / 1e-92 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 159 / 3e-44 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 153 / 4e-42 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 133 / 2e-34 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 124 / 7e-32 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G170000 [exp] 125 / 1e-31 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G081100 [exp] 119 / 3e-30 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.014G083200 [exp] 119 / 3e-30 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.008G176000 [exp] 119 / 3e-30 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028121 pacid=23166512 polypeptide=Lus10028121 locus=Lus10028121.g ID=Lus10028121.BGIv1.0 annot-version=v1.0 ATGCACAGAGTAAGGCTTTCCTCTCAACAGGCACCAGTGCATAAGCTAGGGGATGCACAGATGACACTATCCCCAAAGTTCAGATTAGCAGCGATTCAAT CATCTCTGTTGAACCCTTCACCCGAATTCGAAATCTCTCTCCAAACCAAGCCTCTAATACCAGGCCTCCCCGACGACATCGCATTGAATTGTCTGCTCCG GCTCCCCGTCGAAAGCCACTCTCGATGTAGTACAGTCTGCAAGCGTTGGCATTTACTTCTCAGTAGTAAAGAAAGGTTCTTTACTCGCAGAAAAGAACTA AACTTCAAGGACCCTTGGCTATTCGTCTTTGCATTCCACAAATGTACAGGCAAGATCCATTGGCAGGTTCTCGATCTCACTCACTTATCGTGGCACACCA TTCCAGCTATGCCCTGTAAAGACAAAGTTTGCCCTCATGGATTTAGGTGCGTCTCCATGCCCCAACAAGGCATGCTCATGGTATGTGGAGGGATGGTCTC CGATGTCGATTGTCCTCTCGATTTGGTTTTGAAATATGAGATTCATAAGAATCGATGGACTGTGATGAACCGGATGAACGCGGCTAGGTCTTTTTTCGGC AGTGGAGTGATCGATGGTACGGTATATATAGCCGGGGGTAACAGTAGCGATCTATACGAGCTGGACTCAGCCGAAGCTTTCGATCCTTTGAAGGGGAATT GGCAGAGAATTGCTAGCATGGGGACGAATATGGCGGTTTACGATGCAGCGGTTGTGGATGGGAAGCTCCTAGTGACTGAGGGTTGGTTGTGGCCGTTCTT TGTGTCGCCTAGAGGGCAAGTTTACGATCCGAGAAGTGGGGAATGGGAGAATATGGCTGTAGGGCTGAGGGAAGGATGGACCGGTTCGAGCGTGGTGGTG TATGGACGGTTGTTTGTGGTTTCGGAGCTCGAGAGAATGAAGCTTAAAGTGTATGATACAGAGAATGATTCGTGGGAGACGATTCAAGGACTGCCATTGC CGGAGCAGATATGCAAGCCGTTTGCAGTGGATGCTTGTGACAGCAAAGTTTACGTTGTGGGCCGGAATCTTCATGTCGCTGTGGGATGCATAAATAGGTG GAGGGTGAAGGGGAATAGCCATAACCAAAGGAAATGGTGTTTCAGTGTGGAGTGGGATGTGGTGGATTCGCCTAAAGGGTTTTCGGACTTGACACCATCG AGCTCGCAGGTGTTGTATGGATAG
AA sequence Show only first row Show all	>Lus10028121 pacid=23166512 polypeptide=Lus10028121 locus=Lus10028121.g ID=Lus10028121.BGIv1.0 annot-version=v1.0 MHRVRLSSQQAPVHKLGDAQMTLSPKFRLAAIQSSLLNPSPEFEISLQTKPLIPGLPDDIALNCLLRLPVESHSRCSTVCKRWHLLLSSKERFFTRRKEL NFKDPWLFVFAFHKCTGKIHWQVLDLTHLSWHTIPAMPCKDKVCPHGFRCVSMPQQGMLMVCGGMVSDVDCPLDLVLKYEIHKNRWTVMNRMNAARSFFG SGVIDGTVYIAGGNSSDLYELDSAEAFDPLKGNWQRIASMGTNMAVYDAAVVDGKLLVTEGWLWPFFVSPRGQVYDPRSGEWENMAVGLREGWTGSSVVV YGRLFVVSELERMKLKVYDTENDSWETIQGLPLPEQICKPFAVDACDSKVYVVGRNLHVAVGCINRWRVKGNSHNQRKWCFSVEWDVVDSPKGFSDLTPS SSQVLYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	2.4	0.9138
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	4.0	0.9096
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	4.5	0.9014
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	4.9	0.8993
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	6.6	0.8795
AT3G11780			MD-2-related lipid recognition...		Lus10013366 [exp]	8.5	0.8992
					Lus10008052 [exp]	9.5	0.8975
AT4G21570			Protein of unknown function (D...		Lus10018447 [exp]	10.4	0.8841
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	12.2	0.8562
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	12.6	0.8852

Compare expression of checked genes

Lus10028121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.